NP-MRD: Showing NP-Card for 6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one (NP0319765)

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Record Information

Version

2.0

Created at

2022-09-11 20:58:01 UTC

Updated at

2022-09-11 20:58:01 UTC

NP-MRD ID

NP0319765

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one

Description

6-[(1R,2R,4S,5R)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]Hexan-2-yl]-7-methoxy-2H-chromen-2-one belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one). 6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one is found in Micromelum minutum. Based on a literature review very few articles have been published on 6-[(1R,2R,4S,5R)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]Hexan-2-yl]-7-methoxy-2H-chromen-2-one.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309112222582D          

 21 24  0  0  1  0            999 V2000
    2.9619   -1.6802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2168   -0.8956    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0238   -0.7240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2787    0.0606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0857    0.2321    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3406    1.0167    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1476    1.1883    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4025    1.9729    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6996    0.5752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4447   -0.2095    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6377   -0.3810    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3828   -1.1656    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5758   -1.3371    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3209   -2.1218    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8058   -2.7892    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3209   -3.4566    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5758   -4.2413    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5362   -3.2017    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2007   -3.9554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8218   -2.7892    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5362   -2.3767    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
  5 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
  3 13  2  0  0  0  0
 14 13  1  1  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  6  0  0  0
 16 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 21 20  1  6  0  0  0
 14 21  1  0  0  0  0
 18 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0319765

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(C=C2C=CC(=O)OC2=C1)[C@H]1O[C@H](O)[C@]2(C)O[C@H]12

> <INCHI_IDENTIFIER>
InChI=1S/C15H14O6/c1-15-13(21-15)12(20-14(15)17)8-5-7-3-4-11(16)19-9(7)6-10(8)18-2/h3-6,12-14,17H,1-2H3/t12-,13-,14+,15-/m1/s1

> <INCHI_KEY>
MBQNFMDTXFFAJQ-APIJFGDWSA-N

> <FORMULA>
C15H14O6

> <MOLECULAR_WEIGHT>
290.271

> <EXACT_MASS>
290.079038171

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
35

> <JCHEM_AVERAGE_POLARIZABILITY>
28.44217693963526

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
6-[(1R,2R,4S,5R)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxy-2H-chromen-2-one

> <JCHEM_LOGP>
1.207093627666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.16183840258756

> <JCHEM_PKA_STRONGEST_BASIC>
-3.978579378719615

> <JCHEM_POLAR_SURFACE_AREA>
77.52000000000001

> <JCHEM_REFRACTIVITY>
71.3631

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
6-[(1R,2R,4S,5R)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0       5.529  -3.136   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       6.005  -1.672   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       7.511  -1.352   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.987   0.113   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.493   0.433   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       9.969   1.898   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      11.476   2.218   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      11.951   3.683   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      12.506   1.074   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.030  -0.391   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.524  -0.711   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.048  -2.176   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.542  -2.496   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.066  -3.961   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       8.971  -5.207   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       8.066  -6.452   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       8.542  -7.917   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       6.601  -5.977   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.975  -7.383   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       5.267  -5.207   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       6.601  -4.437   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   13                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   11                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    5   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12    3   14                                                  
CONECT   14   13   15   21                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   20   21                                             
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   14   18                                                  
MASTER        0    0    0    0    0    0    0    0   21    0   48    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₁₄O₆

Average Mass

290.2710 Da

Monoisotopic Mass

290.07904 Da

IUPAC Name

6-[(1R,2R,4S,5R)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxy-2H-chromen-2-one

Traditional Name

6-[(1R,2R,4S,5R)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one

CAS Registry Number

Not Available

SMILES

COC1=C(C=C2C=CC(=O)OC2=C1)[C@H]1O[C@H](O)[C@]2(C)O[C@H]12

InChI Identifier

InChI=1S/C15H14O6/c1-15-13(21-15)12(20-14(15)17)8-5-7-3-4-11(16)19-9(7)6-10(8)18-2/h3-6,12-14,17H,1-2H3/t12-,13-,14+,15-/m1/s1

InChI Key

MBQNFMDTXFFAJQ-APIJFGDWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Micromelum minutum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one).

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Not Available

Direct Parent

Coumarins and derivatives

Alternative Parents

Substituents

Coumarin
Benzopyran
1-benzopyran
Anisole
Alkyl aryl ether
Pyranone
Para-dioxane
Benzenoid
Pyran
Monosaccharide
Heteroaromatic compound
Tetrahydrofuran
Hemiacetal
Lactone
Oxacycle
Organoheterocyclic compound
Dialkyl ether
Oxirane
Ether
Organic oxide
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.21	ChemAxon
pKa (Strongest Acidic)	11.16	ChemAxon
pKa (Strongest Basic)	-4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	77.52 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	71.36 m³·mol⁻¹	ChemAxon
Polarizability	28.44 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

57576988

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162928752

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one (NP0319765)

MOL for NP0319765 (6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one)

3D MOL for NP0319765 (6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one)

3D SDF for NP0319765 (6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one)

3D-SDF for NP0319765 (6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one)

PDB for NP0319765 (6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one)

3D PDB for NP0319765 (6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one)

SMILES for NP0319765 (6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one)

INCHI for NP0319765 (6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one)

Structure for NP0319765 (6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one)

3D Structure for NP0319765 (6-[(1r,2r,4s,5r)-4-hydroxy-5-methyl-3,6-dioxabicyclo[3.1.0]hexan-2-yl]-7-methoxychromen-2-one)