NP-MRD: Showing NP-Card for (2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate (NP0319695)

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Record Information

Version

2.0

Created at

2022-09-11 20:51:48 UTC

Updated at

2022-09-11 20:51:49 UTC

NP-MRD ID

NP0319695

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate

Description

(2R)-2-{2-[(1S,2R,4aR,8aR)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-1,2,3,4,4a,7,8,8a-octahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate belongs to the class of organic compounds known as colensane and clerodane diterpenoids. These are diterpenoids with a structure based on the clerodane or the colensane skeleton. Clerodanes arise from labdanes by two methyl migrations. Based on a literature review very few articles have been published on (2R)-2-{2-[(1S,2R,4aR,8aR)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-1,2,3,4,4a,7,8,8a-octahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112222512D          

 32 33  0  0  1  0            999 V2000
    5.0915    1.9891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.4418    2.4569    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309112222512D          

 32 33  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0319695

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CC[C@]2(C)[C@H](CCC=C2COC(C)=O)[C@@]1(C)CC[C@H](CCOC(C)=O)COC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C26H42O6/c1-18-10-13-26(6)23(17-32-21(4)29)8-7-9-24(26)25(18,5)14-11-22(16-31-20(3)28)12-15-30-19(2)27/h8,18,22,24H,7,9-17H2,1-6H3/t18-,22-,24-,25+,26+/m1/s1

> <INCHI_KEY>
DXNOFIKRWWYVGU-CMQQONEBSA-N

> <FORMULA>
C26H42O6

> <MOLECULAR_WEIGHT>
450.616

> <EXACT_MASS>
450.298139072

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
51.9657070710042

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-2-{2-[(1S,2R,4aR,8aR)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-1,2,3,4,4a,7,8,8a-octahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate

> <JCHEM_LOGP>
4.0349289850000005

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-6.520618304141175

> <JCHEM_POLAR_SURFACE_AREA>
78.9

> <JCHEM_REFRACTIVITY>
123.51119999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
13

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-2-{2-[(1S,2R,4aR,8aR)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0       9.504   3.713   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.016   3.422   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      12.025   4.586   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0      11.521   1.967   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      13.033   1.676   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      13.537   0.221   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      15.049  -0.070   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      15.553  -1.526   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      17.065  -1.817   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      17.570  -3.272   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      16.049  -3.515   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      18.915  -2.523   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      18.939  -0.983   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      20.237  -3.313   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      20.213  -4.853   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      18.867  -5.602   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      20.189  -6.393   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      18.843  -7.142   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      20.165  -7.933   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      21.510  -7.184   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      22.832  -7.974   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      24.177  -7.225   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      22.808  -9.514   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      17.497  -7.891   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      16.176  -7.100   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      16.200  -5.561   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      17.546  -4.812   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      16.057   1.094   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      17.570   0.803   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      18.578   1.967   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      18.074   3.422   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      20.090   1.676   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   28                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12   27                                             
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18   27                                             
CONECT   17   16                                                            
CONECT   18   16   19   24                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   18   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   10   16                                                  
CONECT   28    7   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   66    0
END

View in JSmol

Synonyms

Value	Source
(2R)-2-{2-[(1S,2R,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-1,2,3,4,4a,7,8,8a-octahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetic acid	Generator

Chemical Formula

C₂₆H₄₂O₆

Average Mass

450.6160 Da

Monoisotopic Mass

450.29814 Da

IUPAC Name

(2R)-2-{2-[(1S,2R,4aR,8aR)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-1,2,3,4,4a,7,8,8a-octahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate

Traditional Name

(2R)-2-{2-[(1S,2R,4aR,8aR)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate

CAS Registry Number

Not Available

SMILES

C[C@@H]1CC[C@]2(C)[C@H](CCC=C2COC(C)=O)[C@@]1(C)CC[C@H](CCOC(C)=O)COC(C)=O

InChI Identifier

InChI=1S/C26H42O6/c1-18-10-13-26(6)23(17-32-21(4)29)8-7-9-24(26)25(18,5)14-11-22(16-31-20(3)28)12-15-30-19(2)27/h8,18,22,24H,7,9-17H2,1-6H3/t18-,22-,24-,25+,26+/m1/s1

InChI Key

DXNOFIKRWWYVGU-CMQQONEBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as colensane and clerodane diterpenoids. These are diterpenoids with a structure based on the clerodane or the colensane skeleton. Clerodanes arise from labdanes by two methyl migrations.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Colensane and clerodane diterpenoids

Alternative Parents

Substituents

Clerodane diterpenoid
Tricarboxylic acid or derivatives
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.03	ChemAxon
pKa (Strongest Basic)	-6.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	78.9 Å²	ChemAxon
Rotatable Bond Count	13	ChemAxon
Refractivity	123.51 m³·mol⁻¹	ChemAxon
Polarizability	51.97 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163021476

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate (NP0319695)

MOL for NP0319695 ((2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate)

3D MOL for NP0319695 ((2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate)

3D SDF for NP0319695 ((2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate)

3D-SDF for NP0319695 ((2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate)

PDB for NP0319695 ((2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate)

3D PDB for NP0319695 ((2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate)

SMILES for NP0319695 ((2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate)

INCHI for NP0319695 ((2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate)

Structure for NP0319695 ((2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate)

3D Structure for NP0319695 ((2r)-2-{2-[(1s,2r,4ar,8ar)-5-[(acetyloxy)methyl]-1,2,4a-trimethyl-2,3,4,7,8,8a-hexahydronaphthalen-1-yl]ethyl}-4-(acetyloxy)butyl acetate)