| Record Information |
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| Version | 2.0 |
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| Created at | 2022-09-11 19:24:51 UTC |
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| Updated at | 2022-09-11 19:24:51 UTC |
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| NP-MRD ID | NP0318744 |
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| Secondary Accession Numbers | None |
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| Natural Product Identification |
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| Common Name | methyl 2-[(3r,4r,6s)-4-ethyl-6-[(2r,3e)-2-ethylhex-3-en-1-yl]-6-methyl-1,2-dioxan-3-yl]acetate |
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| Description | Plakortin belongs to the class of organic compounds known as 1,2-dioxanes. These are organic compounds containing 1,2-dioxane, an aliphatic six-member ring with two oxygen atoms in ring positions 1 and 2. methyl 2-[(3r,4r,6s)-4-ethyl-6-[(2r,3e)-2-ethylhex-3-en-1-yl]-6-methyl-1,2-dioxan-3-yl]acetate is found in Plakortis angulospiculatus, Plakortis halichondrioides and Plakortis simplex. methyl 2-[(3r,4r,6s)-4-ethyl-6-[(2r,3e)-2-ethylhex-3-en-1-yl]-6-methyl-1,2-dioxan-3-yl]acetate was first documented in 2017 (PMID: 28383076). Based on a literature review a small amount of articles have been published on plakortin (PMID: 29314833) (PMID: 34723550) (PMID: 34549936) (PMID: 33185636). |
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| Structure | CC\C=C\[C@H](CC)C[C@@]1(C)C[C@@H](CC)[C@@H](CC(=O)OC)OO1 InChI=1S/C18H32O4/c1-6-9-10-14(7-2)12-18(4)13-15(8-3)16(21-22-18)11-17(19)20-5/h9-10,14-16H,6-8,11-13H2,1-5H3/b10-9+/t14-,15+,16+,18-/m0/s1 |
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| Synonyms | Not Available |
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| Chemical Formula | C18H32O4 |
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| Average Mass | 312.4500 Da |
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| Monoisotopic Mass | 312.23006 Da |
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| IUPAC Name | methyl 2-[(3R,4R,6S)-4-ethyl-6-[(2R,3E)-2-ethylhex-3-en-1-yl]-6-methyl-1,2-dioxan-3-yl]acetate |
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| Traditional Name | methyl [(3R,4R,6S)-4-ethyl-6-[(2R,3E)-2-ethylhex-3-en-1-yl]-6-methyl-1,2-dioxan-3-yl]acetate |
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| CAS Registry Number | Not Available |
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| SMILES | CC\C=C\[C@H](CC)C[C@@]1(C)C[C@@H](CC)[C@@H](CC(=O)OC)OO1 |
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| InChI Identifier | InChI=1S/C18H32O4/c1-6-9-10-14(7-2)12-18(4)13-15(8-3)16(21-22-18)11-17(19)20-5/h9-10,14-16H,6-8,11-13H2,1-5H3/b10-9+/t14-,15+,16+,18-/m0/s1 |
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| InChI Key | CWUVZQMWRPJSFS-RUJCAILXSA-N |
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| Experimental Spectra |
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| Not Available | | Predicted Spectra |
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| | Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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| 1D NMR | 13C NMR Spectrum (1D, 25 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| | Chemical Shift Submissions |
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| Not Available | | Species |
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| Species of Origin | |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as 1,2-dioxanes. These are organic compounds containing 1,2-dioxane, an aliphatic six-member ring with two oxygen atoms in ring positions 1 and 2. |
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| Kingdom | Organic compounds |
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| Super Class | Organoheterocyclic compounds |
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| Class | Dioxanes |
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| Sub Class | 1,2-dioxanes |
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| Direct Parent | 1,2-dioxanes |
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| Alternative Parents | |
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| Substituents | - Ortho-dioxane
- Methyl ester
- Dialkyl peroxide
- Carboxylic acid ester
- Oxacycle
- Monocarboxylic acid or derivatives
- Carboxylic acid derivative
- Organic oxygen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Carbonyl group
- Aliphatic heteromonocyclic compound
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| Molecular Framework | Aliphatic heteromonocyclic compounds |
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| External Descriptors | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Predicted Properties | |
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| General References | - Li Q, Zhao K, Peuronen A, Rissanen K, Enders D, Tang Y: Enantioselective Total Syntheses of (+)-Hippolachnin A, (+)-Gracilioether A, (-)-Gracilioether E, and (-)-Gracilioether F. J Am Chem Soc. 2018 Feb 7;140(5):1937-1944. doi: 10.1021/jacs.7b12903. Epub 2018 Jan 24. [PubMed:29314833 ]
- Xue Z, Li Q, Zhang J, Tang Y: Unified Biomimetic Approach to (+)-Hippolachnin A: In-Depth Insights into Its Biosynthetic Origin. Org Lett. 2021 Nov 19;23(22):8783-8788. doi: 10.1021/acs.orglett.1c03280. Epub 2021 Nov 1. [PubMed:34723550 ]
- Bao R, Zhang H, Tang Y: Biomimetic Synthesis of Natural Products: A Journey To Learn, To Mimic, and To Be Better. Acc Chem Res. 2021 Oct 5;54(19):3720-3733. doi: 10.1021/acs.accounts.1c00459. Epub 2021 Sep 22. [PubMed:34549936 ]
- Li Q, Yang H, Tang Y: Recent advances in the synthesis of plakortin-type polyketides. Org Biomol Chem. 2020 Dec 7;18(46):9371-9384. doi: 10.1039/d0ob01930e. [PubMed:33185636 ]
- Persico M, Fattorusso R, Taglialatela-Scafati O, Chianese G, de Paola I, Zaccaro L, Rondinelli F, Lombardo M, Quintavalla A, Trombini C, Fattorusso E, Fattorusso C, Farina B: The interaction of heme with plakortin and a synthetic endoperoxide analogue: new insights into the heme-activated antimalarial mechanism. Sci Rep. 2017 Apr 6;7:45485. doi: 10.1038/srep45485. [PubMed:28383076 ]
- LOTUS database [Link]
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