Np mrd loader

Record Information
Version2.0
Created at2022-09-11 19:24:51 UTC
Updated at2022-09-11 19:24:51 UTC
NP-MRD IDNP0318744
Secondary Accession NumbersNone
Natural Product Identification
Common Namemethyl 2-[(3r,4r,6s)-4-ethyl-6-[(2r,3e)-2-ethylhex-3-en-1-yl]-6-methyl-1,2-dioxan-3-yl]acetate
DescriptionPlakortin belongs to the class of organic compounds known as 1,2-dioxanes. These are organic compounds containing 1,2-dioxane, an aliphatic six-member ring with two oxygen atoms in ring positions 1 and 2. methyl 2-[(3r,4r,6s)-4-ethyl-6-[(2r,3e)-2-ethylhex-3-en-1-yl]-6-methyl-1,2-dioxan-3-yl]acetate is found in Plakortis angulospiculatus, Plakortis halichondrioides and Plakortis simplex. methyl 2-[(3r,4r,6s)-4-ethyl-6-[(2r,3e)-2-ethylhex-3-en-1-yl]-6-methyl-1,2-dioxan-3-yl]acetate was first documented in 2017 (PMID: 28383076). Based on a literature review a small amount of articles have been published on plakortin (PMID: 29314833) (PMID: 34723550) (PMID: 34549936) (PMID: 33185636).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC18H32O4
Average Mass312.4500 Da
Monoisotopic Mass312.23006 Da
IUPAC Namemethyl 2-[(3R,4R,6S)-4-ethyl-6-[(2R,3E)-2-ethylhex-3-en-1-yl]-6-methyl-1,2-dioxan-3-yl]acetate
Traditional Namemethyl [(3R,4R,6S)-4-ethyl-6-[(2R,3E)-2-ethylhex-3-en-1-yl]-6-methyl-1,2-dioxan-3-yl]acetate
CAS Registry NumberNot Available
SMILES
CC\C=C\[C@H](CC)C[C@@]1(C)C[C@@H](CC)[C@@H](CC(=O)OC)OO1
InChI Identifier
InChI=1S/C18H32O4/c1-6-9-10-14(7-2)12-18(4)13-15(8-3)16(21-22-18)11-17(19)20-5/h9-10,14-16H,6-8,11-13H2,1-5H3/b10-9+/t14-,15+,16+,18-/m0/s1
InChI KeyCWUVZQMWRPJSFS-RUJCAILXSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Plakortis angulospiculatusLOTUS Database
Plakortis halichondrioidesLOTUS Database
Plakortis simplexLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1,2-dioxanes. These are organic compounds containing 1,2-dioxane, an aliphatic six-member ring with two oxygen atoms in ring positions 1 and 2.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDioxanes
Sub Class1,2-dioxanes
Direct Parent1,2-dioxanes
Alternative Parents
Substituents
  • Ortho-dioxane
  • Methyl ester
  • Dialkyl peroxide
  • Carboxylic acid ester
  • Oxacycle
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.81ChemAxon
pKa (Strongest Basic)-4.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area44.76 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity88.18 m³·mol⁻¹ChemAxon
Polarizability36.08 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID23277150
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44417613
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Li Q, Zhao K, Peuronen A, Rissanen K, Enders D, Tang Y: Enantioselective Total Syntheses of (+)-Hippolachnin A, (+)-Gracilioether A, (-)-Gracilioether E, and (-)-Gracilioether F. J Am Chem Soc. 2018 Feb 7;140(5):1937-1944. doi: 10.1021/jacs.7b12903. Epub 2018 Jan 24. [PubMed:29314833 ]
  2. Xue Z, Li Q, Zhang J, Tang Y: Unified Biomimetic Approach to (+)-Hippolachnin A: In-Depth Insights into Its Biosynthetic Origin. Org Lett. 2021 Nov 19;23(22):8783-8788. doi: 10.1021/acs.orglett.1c03280. Epub 2021 Nov 1. [PubMed:34723550 ]
  3. Bao R, Zhang H, Tang Y: Biomimetic Synthesis of Natural Products: A Journey To Learn, To Mimic, and To Be Better. Acc Chem Res. 2021 Oct 5;54(19):3720-3733. doi: 10.1021/acs.accounts.1c00459. Epub 2021 Sep 22. [PubMed:34549936 ]
  4. Li Q, Yang H, Tang Y: Recent advances in the synthesis of plakortin-type polyketides. Org Biomol Chem. 2020 Dec 7;18(46):9371-9384. doi: 10.1039/d0ob01930e. [PubMed:33185636 ]
  5. Persico M, Fattorusso R, Taglialatela-Scafati O, Chianese G, de Paola I, Zaccaro L, Rondinelli F, Lombardo M, Quintavalla A, Trombini C, Fattorusso E, Fattorusso C, Farina B: The interaction of heme with plakortin and a synthetic endoperoxide analogue: new insights into the heme-activated antimalarial mechanism. Sci Rep. 2017 Apr 6;7:45485. doi: 10.1038/srep45485. [PubMed:28383076 ]
  6. LOTUS database [Link]