NP-MRD: Showing NP-Card for 5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol (NP0318149)

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Record Information

Version

2.0

Created at

2022-09-11 18:28:33 UTC

Updated at

2022-09-11 18:28:33 UTC

NP-MRD ID

NP0318149

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol

Description

Combretastatin A5 belongs to the class of organic compounds known as stilbenes. These are organic compounds containing a 1,2-diphenylethylene moiety. Stilbenes (C6-C2-C6 ) are derived from the common phenylpropene (C6-C3) skeleton building block. The introduction of one or more hydroxyl groups to a phenyl ring lead to stilbenoids. 5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol is found in Combretum caffrum. Based on a literature review very few articles have been published on Combretastatin A5.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 43 44  0  0  0  0  0  0  0  0999 V2000
    3.5095   -2.8136   -2.2638 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8864   -1.7535   -1.4338 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0608   -0.6836   -1.1022 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7739   -0.5671   -1.5685 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0187    0.5294   -1.1902 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4392    1.5351   -0.3730 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7089    2.6558    0.1299 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5419    2.7348    0.3599 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5230    1.6992    0.1961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8241    2.0492   -0.2040 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8587    1.1564   -0.2496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1390    1.5742   -0.6609 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7014   -0.1665    0.0973 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7735   -1.0417    0.0373 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5994   -1.2091    1.1749 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4418   -0.5393    0.4943 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2388   -1.8584    0.8518 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0342   -2.4103    1.2768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3917    0.3712    0.5405 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7715    1.3855    0.0898 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5415    0.3061   -0.2728 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8565    0.1617    0.1861 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4483    1.1240    1.0441 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1527   -3.6381   -1.6007 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4265   -3.1447   -2.8342 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7555   -2.5817   -3.0143 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3628   -1.3228   -2.2204 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0391    0.5907   -1.6350 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3002    3.6085    0.3578 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9665    3.7201    0.7405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9651    3.0950   -0.4823 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9174    0.9300   -0.7017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1647   -2.0013    1.8526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6088   -1.5846    0.9032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6502   -0.2918    1.7917 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4278   -1.7456    1.9293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4414   -2.7960    0.4047 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2466   -3.3317    1.8941 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4202    0.0260    0.9207 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1920    2.1377    0.7431 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5085    0.9075    1.1696 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8880    1.0602    2.0052 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2357    2.1232    0.6162 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
 11 13  2  0
 13 14  1  0
 14 15  1  0
 13 16  1  0
 16 17  1  0
 17 18  1  0
 16 19  2  0
  6 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  1  0
 21  3  1  0
 19  9  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  4 27  1  0
  5 28  1  0
  7 29  1  0
  8 30  1  0
 10 31  1  0
 12 32  1  0
 15 33  1  0
 15 34  1  0
 15 35  1  0
 18 36  1  0
 18 37  1  0
 18 38  1  0
 19 39  1  0
 20 40  1  0
 23 41  1  0
 23 42  1  0
 23 43  1  0
M  END


  Mrv1652309112220282D          

 23 24  0  0  0  0            999 V2000
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 13 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 16 19  2  0  0  0  0
  9 19  1  0  0  0  0
  6 20  1  0  0  0  0
 20 21  2  0  0  0  0
  3 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0318149

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C(\C=C/C2=CC(O)=C(OC)C(OC)=C2)C=C1OC

> <INCHI_IDENTIFIER>
InChI=1S/C18H20O5/c1-20-15-8-7-12(10-16(15)21-2)5-6-13-9-14(19)18(23-4)17(11-13)22-3/h5-11,19H,1-4H3/b6-5-

> <INCHI_KEY>
IMUMNNFSYPVDEW-WAYWQWQTSA-N

> <FORMULA>
C18H20O5

> <MOLECULAR_WEIGHT>
316.353

> <EXACT_MASS>
316.131073744

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
43

> <JCHEM_AVERAGE_POLARIZABILITY>
33.58090758781445

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[(Z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol

> <JCHEM_LOGP>
3.378836467

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.881749513470568

> <JCHEM_PKA_STRONGEST_BASIC>
-4.309448603926612

> <JCHEM_POLAR_SURFACE_AREA>
57.150000000000006

> <JCHEM_REFRACTIVITY>
89.34650000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
5-[(Z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       5.335   1.540   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.334  -5.390   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       8.002   0.000   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   21                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   20                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   19                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13   17   19                                                  
CONECT   17   16   18                                                       
CONECT   18   17                                                            
CONECT   19   16    9                                                       
CONECT   20    6   21                                                       
CONECT   21   20    3   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22                                                            
MASTER        0    0    0    0    0    0    0    0   23    0   48    0
END

View in JSmol

Synonyms

Value	Source
Combretastatin, (e)-isomer	MeSH
Combretastatin a6	MeSH
Combretastatin a-5	MeSH
Combretastatin a-6	MeSH

Chemical Formula

C₁₈H₂₀O₅

Average Mass

316.3530 Da

Monoisotopic Mass

316.13107 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

COC1=CC=C(\C=C/C2=CC(O)=C(OC)C(OC)=C2)C=C1OC

InChI Identifier

InChI=1S/C18H20O5/c1-20-15-8-7-12(10-16(15)21-2)5-6-13-9-14(19)18(23-4)17(11-13)22-3/h5-11,19H,1-4H3/b6-5-

InChI Key

IMUMNNFSYPVDEW-WAYWQWQTSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Combretum caffrum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as stilbenes. These are organic compounds containing a 1,2-diphenylethylene moiety. Stilbenes (C6-C2-C6 ) are derived from the common phenylpropene (C6-C3) skeleton building block. The introduction of one or more hydroxyl groups to a phenyl ring lead to stilbenoids.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Stilbenes

Sub Class

Not Available

Direct Parent

Stilbenes

Alternative Parents

Substituents

Stilbene
Methoxyphenol
Dimethoxybenzene
O-dimethoxybenzene
Anisole
Phenoxy compound
Phenol ether
Styrene
Methoxybenzene
1-hydroxy-4-unsubstituted benzenoid
Phenol
Alkyl aryl ether
1-hydroxy-2-unsubstituted benzenoid
Monocyclic benzene moiety
Benzenoid
Ether
Organooxygen compound
Organic oxygen compound
Hydrocarbon derivative
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4533273

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5386528

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol (NP0318149)

MOL for NP0318149 (5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol)

3D MOL for NP0318149 (5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol)

3D SDF for NP0318149 (5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol)

3D-SDF for NP0318149 (5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol)

PDB for NP0318149 (5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol)

3D PDB for NP0318149 (5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol)

SMILES for NP0318149 (5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol)

INCHI for NP0318149 (5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol)

Structure for NP0318149 (5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol)

3D Structure for NP0318149 (5-[(1z)-2-(3,4-dimethoxyphenyl)ethenyl]-2,3-dimethoxyphenol)