NP-MRD: Showing NP-Card for 16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol (NP0317692)

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Record Information

Version

2.0

Created at

2022-09-11 17:42:55 UTC

Updated at

2022-09-11 17:42:55 UTC

NP-MRD ID

NP0317692

Secondary Accession Numbers

None

Natural Product Identification

Common Name

16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol

Description

16-(9A-methyl-2,4a,9,9a-tetrahydro-1H-xanthen-3-yl)hexadecan-1-ol belongs to the class of organic compounds known as xanthenes. These are polycyclic aromatic compounds containing a xanthene moiety, which consists of two benzene rings joined to each other by a pyran ring. 16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol is found in Indigofera oblongifolia. Based on a literature review very few articles have been published on 16-(9a-methyl-2,4a,9,9a-tetrahydro-1H-xanthen-3-yl)hexadecan-1-ol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112219422D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309112219422D          

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  5 23  2  0  0  0  0
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  2 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 26 31  1  0  0  0  0
 31 32  1  0  0  0  0
  2 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0317692

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC12CCC(CCCCCCCCCCCCCCCCO)=CC1OC1=CC=CC=C1C2

> <INCHI_IDENTIFIER>
InChI=1S/C30H48O2/c1-30-22-21-26(24-29(30)32-28-20-16-15-19-27(28)25-30)18-14-12-10-8-6-4-2-3-5-7-9-11-13-17-23-31/h15-16,19-20,24,29,31H,2-14,17-18,21-23,25H2,1H3

> <INCHI_KEY>
KBGDADMKAHHEHL-UHFFFAOYSA-N

> <FORMULA>
C30H48O2

> <MOLECULAR_WEIGHT>
440.712

> <EXACT_MASS>
440.365430786

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
80

> <JCHEM_AVERAGE_POLARIZABILITY>
58.2465159389445

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
16-(9a-methyl-2,4a,9,9a-tetrahydro-1H-xanthen-3-yl)hexadecan-1-ol

> <JCHEM_LOGP>
9.232144013333334

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
16.84394282199214

> <JCHEM_PKA_STRONGEST_BASIC>
-1.9916946332789087

> <JCHEM_POLAR_SURFACE_AREA>
29.46

> <JCHEM_REFRACTIVITY>
137.2314

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000  -6.160   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667  -6.160   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.001  -8.470   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.668  -8.470   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.336  -8.470   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.669  -7.700   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      12.003  -8.470   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      13.337  -7.700   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      14.670  -8.470   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      16.004  -7.700   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      17.338  -8.470   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      18.672  -7.700   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      20.005  -8.470   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      21.339  -7.700   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      22.673  -8.470   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      24.006  -7.700   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      25.340  -8.470   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       1.334  -8.470   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.000  -7.700   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -1.334  -8.470   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -4.001  -8.470   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -5.335  -6.160   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -2.667  -6.160   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   24   32                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   23                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21                                                            
CONECT   23    5   24                                                       
CONECT   24   23    2   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   26   32                                                  
CONECT   32   31    2                                                       
MASTER        0    0    0    0    0    0    0    0   32    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₄₈O₂

Average Mass

440.7120 Da

Monoisotopic Mass

440.36543 Da

IUPAC Name

16-(9a-methyl-2,4a,9,9a-tetrahydro-1H-xanthen-3-yl)hexadecan-1-ol

Traditional Name

16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol

CAS Registry Number

Not Available

SMILES

CC12CCC(CCCCCCCCCCCCCCCCO)=CC1OC1=CC=CC=C1C2

InChI Identifier

InChI=1S/C30H48O2/c1-30-22-21-26(24-29(30)32-28-20-16-15-19-27(28)25-30)18-14-12-10-8-6-4-2-3-5-7-9-11-13-17-23-31/h15-16,19-20,24,29,31H,2-14,17-18,21-23,25H2,1H3

InChI Key

KBGDADMKAHHEHL-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Indigofera oblongifolia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as xanthenes. These are polycyclic aromatic compounds containing a xanthene moiety, which consists of two benzene rings joined to each other by a pyran ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

Xanthenes

Alternative Parents

Substituents

Xanthene
Long chain fatty alcohol
Fatty alcohol
Alkyl aryl ether
Fatty acyl
Benzenoid
Oxacycle
Ether
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	9.23	ChemAxon
pKa (Strongest Acidic)	16.84	ChemAxon
pKa (Strongest Basic)	-2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	29.46 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	137.23 m³·mol⁻¹	ChemAxon
Polarizability	58.25 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163192781

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol (NP0317692)

MOL for NP0317692 (16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol)

3D MOL for NP0317692 (16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol)

3D SDF for NP0317692 (16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol)

3D-SDF for NP0317692 (16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol)

PDB for NP0317692 (16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol)

3D PDB for NP0317692 (16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol)

SMILES for NP0317692 (16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol)

INCHI for NP0317692 (16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol)

Structure for NP0317692 (16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol)

3D Structure for NP0317692 (16-(9a-methyl-1,2,4a,9-tetrahydroxanthen-3-yl)hexadecan-1-ol)