NP-MRD: Showing NP-Card for (2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid (NP0317112)

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Record Information

Version

2.0

Created at

2022-09-11 16:46:03 UTC

Updated at

2022-09-11 16:46:04 UTC

NP-MRD ID

NP0317112

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid

Description

Cochlearoid M belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring. Based on a literature review very few articles have been published on Cochlearoid M.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112218462D          

 35 37  0  0  0  0            999 V2000
   -5.3921   -5.1118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9796   -4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3921   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1546   -4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7421   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9171   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5046   -2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9171   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6796   -2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2671   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4421   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0296   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7954   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204    1.3184    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    6.1579    0.6039    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    4.5079   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.2704   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0329   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4421   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0296   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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  2  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
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  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
  9 10  1  0  0  0  0
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 12 13  2  0  0  0  0
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 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
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 12 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
M  END

     RDKit          3D

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   -7.5034   -2.3393   -1.7007 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652309112218462D          

 35 37  0  0  0  0            999 V2000
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M  END
> <DATABASE_ID>
NP0317112

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCC\C(C)=C\CC\C(=C\CC1=C(O)C=C2C(OC(=O)C3=C(O)C=CC(O)=C23)=C1)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C28H30O7/c1-16(2)6-4-7-17(3)8-5-9-18(27(32)33)10-11-19-14-24-20(15-23(19)31)25-21(29)12-13-22(30)26(25)28(34)35-24/h6,8,10,12-15,29-31H,4-5,7,9,11H2,1-3H3,(H,32,33)/b17-8+,18-10-

> <INCHI_KEY>
SHNIIILLSYCBDO-HVTKOPHBSA-N

> <FORMULA>
C28H30O7

> <MOLECULAR_WEIGHT>
478.541

> <EXACT_MASS>
478.199153306

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
65

> <JCHEM_AVERAGE_POLARIZABILITY>
52.19674925235721

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2Z,5E)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxo-6H-benzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid

> <JCHEM_LOGP>
6.904319624666666

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
7.626622723030509

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.162862162968931

> <JCHEM_PKA_STRONGEST_BASIC>
-4.236533530290875

> <JCHEM_POLAR_SURFACE_AREA>
124.29

> <JCHEM_REFRACTIVITY>
136.447

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2Z,5E)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0     -10.065  -9.542   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -9.295  -8.208   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -10.065  -6.875   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -7.755  -8.208   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.985  -6.875   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.445  -6.875   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -4.675  -5.541   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -5.445  -4.207   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.135  -5.541   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.365  -4.207   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.825  -4.207   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.055  -2.874   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.485  -2.874   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.255  -1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.795  -1.540   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.565  -0.206   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.105  -0.206   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       6.875   1.127   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       8.415   1.127   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       9.185   2.461   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       9.185  -0.206   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      10.725  -0.206   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      11.495   1.127   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      11.495  -1.540   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.725  -2.874   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.185  -2.874   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       8.415  -4.207   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       8.415  -1.540   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.875  -1.540   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.105  -2.874   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       4.565  -2.874   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       3.795  -4.207   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      -0.825  -1.540   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -0.055  -0.206   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      -2.365  -1.540   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   33                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   31                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   29                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   28                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   21   29                                                  
CONECT   29   28   17   30                                                  
CONECT   30   29   31                                                       
CONECT   31   30   15   32                                                  
CONECT   32   31                                                            
CONECT   33   12   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₀O₇

Average Mass

478.5410 Da

Monoisotopic Mass

478.19915 Da

IUPAC Name

(2Z,5E)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxo-6H-benzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid

Traditional Name

(2Z,5E)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid

CAS Registry Number

Not Available

SMILES

CC(C)=CCC\C(C)=C\CC\C(=C\CC1=C(O)C=C2C(OC(=O)C3=C(O)C=CC(O)=C23)=C1)C(O)=O

InChI Identifier

InChI=1S/C28H30O7/c1-16(2)6-4-7-17(3)8-5-9-18(27(32)33)10-11-19-14-24-20(15-23(19)31)25-21(29)12-13-22(30)26(25)28(34)35-24/h6,8,10,12-15,29-31H,4-5,7,9,11H2,1-3H3,(H,32,33)/b17-8+,18-10-

InChI Key

SHNIIILLSYCBDO-HVTKOPHBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Terpene lactones

Alternative Parents

Substituents

Terpene lactone
Farsesane sesquiterpenoid
Sesquiterpenoid
Isocoumarin
Coumarin
2-benzopyran
1-benzopyran
Benzopyran
Medium-chain fatty acid
1-hydroxy-2-unsubstituted benzenoid
Methyl-branched fatty acid
Pyranone
Hydroxy fatty acid
Heterocyclic fatty acid
Branched fatty acid
Fatty acyl
Fatty acid
Benzenoid
Unsaturated fatty acid
Pyran
Heteroaromatic compound
Vinylogous acid
Lactone
Oxacycle
Organoheterocyclic compound
Polyol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.9	ChemAxon
pKa (Strongest Acidic)	4.16	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	124.29 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	136.45 m³·mol⁻¹	ChemAxon
Polarizability	52.2 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

146684460

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid (NP0317112)

MOL for NP0317112 ((2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid)

3D MOL for NP0317112 ((2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid)

3D SDF for NP0317112 ((2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid)

3D-SDF for NP0317112 ((2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid)

PDB for NP0317112 ((2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid)

3D PDB for NP0317112 ((2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid)

SMILES for NP0317112 ((2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid)

INCHI for NP0317112 ((2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid)

Structure for NP0317112 ((2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid)

3D Structure for NP0317112 ((2z,5e)-6,10-dimethyl-2-(2-{2,7,10-trihydroxy-6-oxobenzo[c]chromen-3-yl}ethylidene)undeca-5,9-dienoic acid)