NP-MRD: Showing NP-Card for (2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol (NP0316887)

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Record Information

Version

2.0

Created at

2022-09-11 16:22:41 UTC

Updated at

2022-09-11 16:22:42 UTC

NP-MRD ID

NP0316887

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol

Description

(2R,3R,4S,5R,6S)-5-methoxy-2-(methoxymethyl)-6-{[(2R,3R,4S,5S)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2S,3R,4R,5S,6S)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds. Based on a literature review very few articles have been published on (2R,3R,4S,5R,6S)-5-methoxy-2-(methoxymethyl)-6-{[(2R,3R,4S,5S)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2S,3R,4R,5S,6S)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112218222D          

 43 44  0  0  1  0            999 V2000
   -3.2236   -5.2520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4135   -5.4079    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3333   -6.3434    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7932   -5.7198    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0632   -4.9402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0632   -7.1230    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6033   -7.7466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3333   -8.5262    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2531   -7.2789    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0169   -8.0584    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8271   -8.2143    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3672   -7.5907    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1773   -7.7466    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7174   -7.1230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4473   -6.3434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    0.5570   -5.2520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
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  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
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  4  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  7 10  1  0  0  0  0
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 38 42  1  6  0  0  0
 42 43  1  0  0  0  0
M  END

     RDKit          3D

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   -3.0031    1.3065    2.6425 O   0  0  0  0  0  0  0  0  0  0  0  0
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 43 97  1  0
M  END


  Mrv1652309112218222D          

 43 44  0  0  1  0            999 V2000
   -3.2236   -5.2520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4135   -5.4079    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3333   -6.3434    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7932   -5.7198    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0632   -4.9402    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0632   -7.1230    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6033   -7.7466    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3333   -8.5262    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2531   -7.2789    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0169   -8.0584    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8271   -8.2143    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3672   -7.5907    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1773   -7.7466    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7174   -7.1230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4473   -6.3434    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9874   -5.7198    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4473   -8.5262    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2575   -8.6821    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9073   -9.1498    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1773   -9.9293    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9874  -10.0853    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5275   -9.4616    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3377   -9.6175    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8777   -8.9939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6077  -10.3971    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.4178  -10.5530    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9579   -9.9293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0676  -11.0207    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3377  -11.8003    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7976  -12.4239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2575  -10.8648    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7174  -11.4885    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9073  -11.3325    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0971   -8.9939    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5570   -9.6175    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2531   -9.4616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2870   -6.6552    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0971   -6.8111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6372   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3672   -5.4079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0169   -5.8757    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5570   -5.2520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  5  6  1  0  0  0  0
  4  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  1  0  0  0
 12 11  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 14 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
 20 21  1  6  0  0  0
 22 21  1  6  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 26 27  1  6  0  0  0
 27 28  1  0  0  0  0
 26 29  1  0  0  0  0
 29 30  1  1  0  0  0
 30 31  1  0  0  0  0
 29 32  1  0  0  0  0
 22 32  1  0  0  0  0
 32 33  1  1  0  0  0
 33 34  1  0  0  0  0
 20 35  1  0  0  0  0
 12 35  1  0  0  0  0
 35 36  1  1  0  0  0
 36 37  1  0  0  0  0
 10 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 38 42  1  6  0  0  0
 42 43  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0316887

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC[C@H](OC)[C@H](OC)[C@H](O[C@@H]1O[C@H](COC)[C@@H](O)[C@H](O[C@@H]2O[C@@H](C)[C@H](OC)[C@@H](OC)[C@H]2OC)[C@H]1OC)[C@@H](COC)OC

> <INCHI_IDENTIFIER>
InChI=1S/C28H54O15/c1-15-20(35-7)24(37-9)26(39-11)27(40-15)43-23-19(29)16(12-30-2)41-28(25(23)38-10)42-22(18(34-6)14-32-4)21(36-8)17(33-5)13-31-3/h15-29H,12-14H2,1-11H3/t15-,16+,17-,18+,19+,20-,21-,22+,23-,24+,25+,26+,27-,28-/m0/s1

> <INCHI_KEY>
NUXGIAJNTOJSIQ-DPEHFVRXSA-N

> <FORMULA>
C28H54O15

> <MOLECULAR_WEIGHT>
630.725

> <EXACT_MASS>
630.346271039

> <JCHEM_ACCEPTOR_COUNT>
15

> <JCHEM_ATOM_COUNT>
97

> <JCHEM_AVERAGE_POLARIZABILITY>
66.72281648102245

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3R,4S,5R,6S)-5-methoxy-2-(methoxymethyl)-6-{[(2R,3R,4S,5S)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2S,3R,4R,5S,6S)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol

> <JCHEM_LOGP>
0.20648486333333232

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.04100929001497

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2965244380419185

> <JCHEM_POLAR_SURFACE_AREA>
149.45000000000002

> <JCHEM_REFRACTIVITY>
149.19849999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
20

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R,4S,5R,6S)-5-methoxy-2-(methoxymethyl)-6-{[(2R,3R,4S,5S)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2S,3R,4R,5S,6S)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0      -6.017  -9.804   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -4.505 -10.095   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -4.001 -11.550   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.489 -11.841   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -1.481 -10.677   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -1.985  -9.222   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.985 -13.296   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -2.993 -14.460   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -2.489 -15.915   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.472 -13.587   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       0.032 -15.042   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       1.544 -15.333   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       2.552 -14.169   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.064 -14.460   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.072 -13.296   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.568 -11.841   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       5.577 -10.677   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.568 -15.915   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.081 -16.207   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       3.560 -17.080   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       4.064 -18.535   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       5.577 -18.826   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       6.585 -17.662   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       8.097 -17.953   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       9.105 -16.789   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       8.601 -19.408   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      10.113 -19.699   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      11.121 -18.535   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.593 -20.572   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       8.097 -22.027   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       7.089 -23.191   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       6.081 -20.281   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       5.072 -21.445   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       3.560 -21.154   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       2.048 -16.789   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       1.040 -17.953   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      -0.472 -17.662   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       0.536 -12.423   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       2.048 -12.714   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0       3.056 -11.550   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0       2.552 -10.095   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0       0.032 -10.968   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0       1.040  -9.804   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5                                                            
CONECT    7    4    8   10                                                  
CONECT    8    7    9                                                       
CONECT    9    8                                                            
CONECT   10    7   11   38                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   35                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   18                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   14   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   35                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   32                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   26   30   32                                                  
CONECT   30   29   31                                                       
CONECT   31   30                                                            
CONECT   32   29   22   33                                                  
CONECT   33   32   34                                                       
CONECT   34   33                                                            
CONECT   35   20   12   36                                                  
CONECT   36   35   37                                                       
CONECT   37   36                                                            
CONECT   38   10   39   42                                                  
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40                                                            
CONECT   42   38   43                                                       
CONECT   43   42                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   88    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₅₄O₁₅

Average Mass

630.7250 Da

Monoisotopic Mass

630.34627 Da

IUPAC Name

(2R,3R,4S,5R,6S)-5-methoxy-2-(methoxymethyl)-6-{[(2R,3R,4S,5S)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2S,3R,4R,5S,6S)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol

Traditional Name

(2R,3R,4S,5R,6S)-5-methoxy-2-(methoxymethyl)-6-{[(2R,3R,4S,5S)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2S,3R,4R,5S,6S)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol

CAS Registry Number

Not Available

SMILES

COC[C@H](OC)[C@H](OC)[C@H](O[C@@H]1O[C@H](COC)[C@@H](O)[C@H](O[C@@H]2O[C@@H](C)[C@H](OC)[C@@H](OC)[C@H]2OC)[C@H]1OC)[C@@H](COC)OC

InChI Identifier

InChI=1S/C28H54O15/c1-15-20(35-7)24(37-9)26(39-11)27(40-15)43-23-19(29)16(12-30-2)41-28(25(23)38-10)42-22(18(34-6)14-32-4)21(36-8)17(33-5)13-31-3/h15-29H,12-14H2,1-11H3/t15-,16+,17-,18+,19+,20-,21-,22+,23-,24+,25+,26+,27-,28-/m0/s1

InChI Key

NUXGIAJNTOJSIQ-DPEHFVRXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Oligosaccharides

Alternative Parents

Substituents

Oligosaccharide
Fatty acyl glycoside
Alkyl glycoside
Glycosyl compound
O-glycosyl compound
Fatty acyl
Oxane
Secondary alcohol
Acetal
Dialkyl ether
Ether
Organoheterocyclic compound
Oxacycle
Hydrocarbon derivative
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.21	ChemAxon
pKa (Strongest Acidic)	13.04	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	15	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	149.45 Å²	ChemAxon
Rotatable Bond Count	20	ChemAxon
Refractivity	149.2 m³·mol⁻¹	ChemAxon
Polarizability	66.72 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163086154

PDB ID

Not Available

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References

General References

LOTUS database [Link]

Showing NP-Card for (2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol (NP0316887)

MOL for NP0316887 ((2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol)

3D MOL for NP0316887 ((2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol)

3D SDF for NP0316887 ((2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol)

3D-SDF for NP0316887 ((2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol)

PDB for NP0316887 ((2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol)

3D PDB for NP0316887 ((2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol)

SMILES for NP0316887 ((2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol)

INCHI for NP0316887 ((2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol)

Structure for NP0316887 ((2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol)

3D Structure for NP0316887 ((2r,3r,4s,5r,6s)-5-methoxy-2-(methoxymethyl)-6-{[(2r,3r,4s,5s)-1,2,4,5,6-pentamethoxyhexan-3-yl]oxy}-4-{[(2s,3r,4r,5s,6s)-3,4,5-trimethoxy-6-methyloxan-2-yl]oxy}oxan-3-ol)