NP-MRD: Showing NP-Card for 8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid (NP0316822)

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Record Information

Version

2.0

Created at

2022-09-11 16:15:41 UTC

Updated at

2022-09-11 16:15:41 UTC

NP-MRD ID

NP0316822

Secondary Accession Numbers

None

Natural Product Identification

Common Name

8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid

Description

8-(22,25-Dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]Tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid belongs to the class of organic compounds known as saccharolipids. Saccharolipids are compounds in which fatty acids are linked directly to a sugar backbone, forming structures that are compatible with membrane bilayers. In the saccharolipids, a sugar substitutes for the glycerol backbone that is present in glycerolipids and glycerophospholipids. The most familiar saccharolipids contain an acylated glucosamine. In contrast to others glycolipids, the fatty acid is not glycosidically linked to the sugar moiety. 8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid is found in Sorangium cellulosum. 8-(22,25-Dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]Tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004161518462D          

 69 74  0  0  0  0            999 V2000
   13.4945   -0.0305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   13.6348   -2.2087    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1359   -2.8658    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4555   -3.6264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9566   -4.2834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.2762   -5.0440    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.1381   -4.1799    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.6326   -0.8946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1315   -0.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8119    0.5230    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.9499   -0.3411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2512   -1.1114    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.0823   -1.2824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1948   -2.1551    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   14.5359   -6.1244    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   13.7444   -7.1077    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   11.7760    1.4453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   13.4726    1.8391    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   15.5010    2.2107    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.8781    1.0124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.4418    0.3415    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   17.5862   -0.5852    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2583   -1.7382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5848   -2.2146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5632   -5.3261    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
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 11 12  1  0  0  0  0
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 13 64  1  0  0  0  0
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 44 69  1  0  0  0  0
 38 69  1  0  0  0  0
M  END

     RDKit          3D

145150  0  0  0  0  0  0  0  0999 V2000
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    5.5003   -0.9607   -0.8337 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1533004161518462D          

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 57 56  1  4  0  0  0
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 59 58  1  4  0  0  0
 59 60  2  0  0  0  0
 60 61  1  0  0  0  0
 61 62  2  0  0  0  0
 61 63  1  0  0  0  0
 63 64  1  0  0  0  0
 13 64  1  0  0  0  0
 64 65  1  0  0  0  0
 65 66  2  0  0  0  0
 15 66  1  0  0  0  0
 52 67  1  0  0  0  0
 48 67  1  0  0  0  0
 67 68  1  0  0  0  0
 44 69  1  0  0  0  0
 38 69  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0316822

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(CCCCC(O)=O)C=C(C)C1OC2CC=CCCC=CC(OC3OC(CO)C(O)C(O)C3O)C(O)C3CC(O)C(C)C(CC=CC4OC5CC(OC5C=CC=CC=CC(=O)OC1C=C2)C4C)O3

> <INCHI_IDENTIFIER>
InChI=1S/C53H76O16/c1-31(17-14-15-23-46(56)57)27-32(2)52-41-26-25-35(63-52)18-10-6-5-7-12-20-40(68-53-51(62)50(61)49(60)45(30-54)69-53)48(59)44-28-36(55)33(3)37(65-44)21-16-22-38-34(4)42-29-43(64-38)39(66-42)19-11-8-9-13-24-47(58)67-41/h6,8-13,16,19-20,22,24-27,31,33-45,48-55,59-62H,5,7,14-15,17-18,21,23,28-30H2,1-4H3,(H,56,57)

> <INCHI_KEY>
JPIZDCIUPYOPEB-UHFFFAOYSA-N

> <FORMULA>
C53H76O16

> <MOLECULAR_WEIGHT>
969.175

> <EXACT_MASS>
968.513336367

> <JCHEM_ACCEPTOR_COUNT>
15

> <JCHEM_ATOM_COUNT>
145

> <JCHEM_AVERAGE_POLARIZABILITY>
104.04641949070238

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid

> <ALOGPS_LOGP>
4.21

> <JCHEM_LOGP>
4.917783541

> <ALOGPS_LOGS>
-5.18

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.161433343634144

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.694376038012813

> <JCHEM_PKA_STRONGEST_BASIC>
-2.891445529246674

> <JCHEM_POLAR_SURFACE_AREA>
240.35999999999996

> <JCHEM_REFRACTIVITY>
262.13320000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.40e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0      25.190  -0.057   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      25.786  -1.477   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      24.855  -2.703   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      25.452  -4.123   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      24.520  -5.349   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      25.117  -6.769   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      24.186  -7.996   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      24.782  -9.416   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0      22.658  -7.803   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      27.314  -1.670   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      28.245  -0.443   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      27.649   0.976   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      29.773  -0.637   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      30.336  -2.075   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      31.887  -2.394   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      32.097  -4.023   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      32.029  -5.643   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      31.647  -7.219   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      30.931  -8.635   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      29.882  -9.861   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      28.582 -10.805   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      27.134 -11.432   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      25.568 -11.730   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      25.656 -13.268   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      27.032 -13.960   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      28.319 -13.115   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      29.695 -13.808   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      30.982 -12.963   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      32.358 -13.656   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      29.783 -15.345   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      31.158 -16.038   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      28.495 -16.190   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      28.583 -17.728   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      27.120 -15.498   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      25.832 -16.343   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      23.990 -11.613   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      23.776 -13.139   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0      22.426 -11.290   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      21.584 -12.616   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      20.032 -12.620   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      19.256 -13.951   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      19.270 -11.266   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      17.730 -11.301   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      19.984  -9.850   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      19.004  -8.535   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      18.153  -7.133   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      17.546  -5.599   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      16.907  -4.043   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0      18.073  -2.948   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      17.796  -1.372   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      16.359  -1.610   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      15.160  -1.574   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      15.755   0.045   0.000  0.00  0.00           O+0
HETATM   54  C   UNK     0      17.491   0.172   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      19.029   0.969   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      20.518   1.847   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      21.982   2.698   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      23.522   3.250   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      25.149   3.433   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      26.765   3.242   0.000  0.00  0.00           C+0
HETATM   61  C   UNK     0      28.280   2.733   0.000  0.00  0.00           C+0
HETATM   62  O   UNK     0      28.935   4.127   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0      29.639   1.890   0.000  0.00  0.00           O+0
HETATM   64  C   UNK     0      30.691   0.637   0.000  0.00  0.00           C+0
HETATM   65  C   UNK     0      32.240   0.352   0.000  0.00  0.00           C+0
HETATM   66  C   UNK     0      32.828  -1.092   0.000  0.00  0.00           C+0
HETATM   67  C   UNK     0      15.416  -3.245   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0      14.158  -4.134   0.000  0.00  0.00           C+0
HETATM   69  O   UNK     0      21.585  -9.942   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   10                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    2   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   64                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   66                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   36                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   34                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   30                                                  
CONECT   28   27   29                                                       
CONECT   29   28                                                            
CONECT   30   27   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   25   35                                                  
CONECT   35   34                                                            
CONECT   36   23   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36   39   69                                                  
CONECT   39   38   40                                                       
CONECT   40   39   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   45   69                                                  
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49   67                                                  
CONECT   49   48   50                                                       
CONECT   50   49   51   54                                                  
CONECT   51   50   52                                                       
CONECT   52   51   53   67                                                  
CONECT   53   52   54                                                       
CONECT   54   53   50   55                                                  
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62   63                                                  
CONECT   62   61                                                            
CONECT   63   61   64                                                       
CONECT   64   63   13   65                                                  
CONECT   65   64   66                                                       
CONECT   66   65   15                                                       
CONECT   67   52   48   68                                                  
CONECT   68   67                                                            
CONECT   69   44   38                                                       
MASTER        0    0    0    0    0    0    0    0   69    0  148    0
END

View in JSmol

Synonyms

Value	Source
8-(22,25-Dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1,.1,.0,]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoate	Generator
8-(22,25-Dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoate	Generator

Chemical Formula

C₅₃H₇₆O₁₆

Average Mass

969.1750 Da

Monoisotopic Mass

968.51334 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(CCCCC(O)=O)C=C(C)C1OC2CC=CCCC=CC(OC3OC(CO)C(O)C(O)C3O)C(O)C3CC(O)C(C)C(CC=CC4OC5CC(OC5C=CC=CC=CC(=O)OC1C=C2)C4C)O3

InChI Identifier

InChI=1S/C53H76O16/c1-31(17-14-15-23-46(56)57)27-32(2)52-41-26-25-35(63-52)18-10-6-5-7-12-20-40(68-53-51(62)50(61)49(60)45(30-54)69-53)48(59)44-28-36(55)33(3)37(65-44)21-16-22-38-34(4)42-29-43(64-38)39(66-42)19-11-8-9-13-24-47(58)67-41/h6,8-13,16,19-20,22,24-27,31,33-45,48-55,59-62H,5,7,14-15,17-18,21,23,28-30H2,1-4H3,(H,56,57)

InChI Key

JPIZDCIUPYOPEB-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sorangium cellulosum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as saccharolipids. Saccharolipids are compounds in which fatty acids are linked directly to a sugar backbone, forming structures that are compatible with membrane bilayers. In the saccharolipids, a sugar substitutes for the glycerol backbone that is present in glycerolipids and glycerophospholipids. The most familiar saccharolipids contain an acylated glucosamine. In contrast to others glycolipids, the fatty acid is not glycosidically linked to the sugar moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Saccharolipids

Sub Class

Not Available

Direct Parent

Saccharolipids

Alternative Parents

Substituents

Saccharolipid
Macrolide
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Medium-chain fatty acid
1,4-dioxepane
Branched fatty acid
Dioxepane
Heterocyclic fatty acid
Hydroxy fatty acid
Methyl-branched fatty acid
Unsaturated fatty acid
Pyran
Fatty acid
Dicarboxylic acid or derivatives
Oxane
Fatty acyl
Monosaccharide
Tetrahydrofuran
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Secondary alcohol
Carboxylic acid ester
Lactone
Acetal
Oxacycle
Carboxylic acid derivative
Ether
Organoheterocyclic compound
Polyol
Dialkyl ether
Carboxylic acid
Primary alcohol
Alcohol
Organic oxygen compound
Carbonyl group
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.21	ALOGPS
logP	4.92	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	4.69	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	15	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	240.36 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	262.13 m³·mol⁻¹	ChemAxon
Polarizability	104.05 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid (NP0316822)

MOL for NP0316822 (8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid)

3D MOL for NP0316822 (8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid)

3D SDF for NP0316822 (8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid)

3D-SDF for NP0316822 (8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid)

PDB for NP0316822 (8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid)

3D PDB for NP0316822 (8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid)

SMILES for NP0316822 (8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid)

INCHI for NP0316822 (8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid)

Structure for NP0316822 (8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid)

3D Structure for NP0316822 (8-(22,25-dihydroxy-21,40-dimethyl-3-oxo-26-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-2,11,15,35,39-pentaoxapentacyclo[32.2.2.1¹²,¹⁶.1²⁰,²⁴.0¹⁰,¹⁴]tetraconta-4,6,8,17,27,31,37-heptaen-36-yl)-6-methylnon-7-enoic acid)