NP-MRD: Showing NP-Card for 2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate (NP0316391)

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Record Information

Version

2.0

Created at

2022-09-11 15:33:33 UTC

Updated at

2022-09-11 15:33:33 UTC

NP-MRD ID

NP0316391

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate

Description

2-(3,4-Dihydroxyphenyl)-5-hydroxy-4-oxo-4H-chromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate belongs to the class of organic compounds known as depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids), commonly but not necessarily regularly alternating. 2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate is found in Marrubium vulgare. 2-(3,4-Dihydroxyphenyl)-5-hydroxy-4-oxo-4H-chromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004231519022D          

 38 41  0  0  0  0            999 V2000
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   10.0026   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   11.4315   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1533004231519022D          

 38 41  0  0  0  0            999 V2000
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.5737   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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 31 38  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0316391

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(OC(=O)C1OC(O)C(O)C(O)C1O)C(=O)OC1=CC(O)=C2C(=O)C=C(OC2=C1)C1=CC=C(O)C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C24H22O14/c1-8(35-24(34)21-19(30)18(29)20(31)23(33)38-21)22(32)36-10-5-13(27)17-14(28)7-15(37-16(17)6-10)9-2-3-11(25)12(26)4-9/h2-8,18-21,23,25-27,29-31,33H,1H3

> <INCHI_KEY>
IFPLUAYRXPYXOS-UHFFFAOYSA-N

> <FORMULA>
C24H22O14

> <MOLECULAR_WEIGHT>
534.426

> <EXACT_MASS>
534.100955388

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
60

> <JCHEM_AVERAGE_POLARIZABILITY>
50.3962063410799

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxo-4H-chromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate

> <ALOGPS_LOGP>
1.64

> <JCHEM_LOGP>
0.11767274900000047

> <ALOGPS_LOGS>
-2.73

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
8.70962478344456

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.909848378084842

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6863413369034026

> <JCHEM_POLAR_SURFACE_AREA>
229.73999999999995

> <JCHEM_REFRACTIVITY>
122.54099999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
9.85e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.669  -7.700   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       9.336  -6.930   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       8.002  -9.240   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       5.335  -7.700   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.667  -7.700   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       8.002  -4.620   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      12.003  -6.930   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      12.003  -5.390   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      13.337  -7.700   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      14.670  -6.930   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      14.670  -5.390   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      16.004  -4.620   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      16.004  -3.080   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      17.338  -5.390   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      18.672  -4.620   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      18.672  -3.080   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      20.005  -5.390   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      20.005  -6.930   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      18.672  -7.700   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      17.338  -6.930   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      16.004  -7.700   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      21.339  -7.700   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      22.673  -6.930   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      24.006  -7.700   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      24.006  -9.240   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      25.340 -10.010   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      22.673 -10.010   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      22.673 -11.550   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0      21.339  -9.240   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   16                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   14                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12    6   15                                                  
CONECT   15   14                                                            
CONECT   16    2   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   30                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   29                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28   31                                                  
CONECT   28   27   29                                                       
CONECT   29   28   23   30                                                  
CONECT   30   29   19                                                       
CONECT   31   27   32   38                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36   31                                                       
MASTER        0    0    0    0    0    0    0    0   38    0   82    0
END

View in JSmol

Synonyms

Value	Source
2-(3,4-Dihydroxyphenyl)-5-hydroxy-4-oxo-4H-chromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoic acid	Generator

Chemical Formula

C₂₄H₂₂O₁₄

Average Mass

534.4260 Da

Monoisotopic Mass

534.10096 Da

IUPAC Name

2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxo-4H-chromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate

Traditional Name

2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate

CAS Registry Number

Not Available

SMILES

CC(OC(=O)C1OC(O)C(O)C(O)C1O)C(=O)OC1=CC(O)=C2C(=O)C=C(OC2=C1)C1=CC=C(O)C(O)=C1

InChI Identifier

InChI=1S/C24H22O14/c1-8(35-24(34)21-19(30)18(29)20(31)23(33)38-21)22(32)36-10-5-13(27)17-14(28)7-15(37-16(17)6-10)9-2-3-11(25)12(26)4-9/h2-8,18-21,23,25-27,29-31,33H,1H3

InChI Key

IFPLUAYRXPYXOS-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Marrubium vulgare	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids), commonly but not necessarily regularly alternating.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Peptidomimetics

Sub Class

Depsipeptides

Direct Parent

Depsipeptides

Alternative Parents

Substituents

Depsipeptide
3'-hydroxyflavonoid
4'-hydroxyflavonoid
5-hydroxyflavonoid
Flavone
Hydroxyflavonoid
Glucuronic acid or derivatives
Chromone
Benzopyran
1-benzopyran
Catechol
1-hydroxy-2-unsubstituted benzenoid
1-hydroxy-4-unsubstituted benzenoid
Beta-hydroxy acid
Pyranone
Phenol
Benzenoid
Monocyclic benzene moiety
Pyran
Dicarboxylic acid or derivatives
Hydroxy acid
Monosaccharide
Oxane
Heteroaromatic compound
Vinylogous acid
Carboxylic acid ester
Hemiacetal
Secondary alcohol
Polyol
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Alcohol
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.64	ALOGPS
logP	0.12	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	6.91	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	229.74 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	122.54 m³·mol⁻¹	ChemAxon
Polarizability	50.4 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate (NP0316391)

MOL for NP0316391 (2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate)

3D MOL for NP0316391 (2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate)

3D SDF for NP0316391 (2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate)

3D-SDF for NP0316391 (2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate)

PDB for NP0316391 (2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate)

3D PDB for NP0316391 (2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate)

SMILES for NP0316391 (2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate)

INCHI for NP0316391 (2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate)

Structure for NP0316391 (2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate)

3D Structure for NP0316391 (2-(3,4-dihydroxyphenyl)-5-hydroxy-4-oxochromen-7-yl 2-(3,4,5,6-tetrahydroxyoxane-2-carbonyloxy)propanoate)