NP-MRD: Showing NP-Card for (1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol (NP0315971)

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Record Information

Version

2.0

Created at

2022-09-11 14:52:02 UTC

Updated at

2022-09-11 14:52:02 UTC

NP-MRD ID

NP0315971

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol

Description

(1S,4R,5R,7R,7aS,8S,9R,11aS,11bS)-8-(1H-indol-3-yl)-4,7,11b-trimethyl-9-(prop-1-en-2-yl)-dodecahydro-1H-cyclohexa[e]naphthalene-1,5-diol belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. Based on a literature review very few articles have been published on (1S,4R,5R,7R,7aS,8S,9R,11aS,11bS)-8-(1H-indol-3-yl)-4,7,11b-trimethyl-9-(prop-1-en-2-yl)-dodecahydro-1H-cyclohexa[e]naphthalene-1,5-diol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112216522D          

 31 35  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309112216522D          

 31 35  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0315971

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1C[C@@H](O)[C@@]2(C)[C@H](C)CC[C@H](O)[C@]22CC[C@H]([C@@H]([C@H]12)C1=CNC2=CC=CC=C12)C(C)=C

> <INCHI_IDENTIFIER>
InChI=1S/C28H39NO2/c1-16(2)19-12-13-28-23(30)11-10-18(4)27(28,5)24(31)14-17(3)26(28)25(19)21-15-29-22-9-7-6-8-20(21)22/h6-9,15,17-19,23-26,29-31H,1,10-14H2,2-5H3/t17-,18-,19+,23+,24-,25-,26+,27-,28+/m1/s1

> <INCHI_KEY>
KHMAONVROPNUDX-PHLGNYFESA-N

> <FORMULA>
C28H39NO2

> <MOLECULAR_WEIGHT>
421.625

> <EXACT_MASS>
421.2980795

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
49.33142463035449

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,4R,5R,7R,7aS,8S,9R,11aS,11bS)-8-(1H-indol-3-yl)-4,7,11b-trimethyl-9-(prop-1-en-2-yl)-dodecahydro-1H-cyclohexa[e]naphthalene-1,5-diol

> <JCHEM_LOGP>
5.282348540999999

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.976546313088487

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.370449318179102

> <JCHEM_PKA_STRONGEST_BASIC>
-2.94178358530134

> <JCHEM_POLAR_SURFACE_AREA>
56.25

> <JCHEM_REFRACTIVITY>
126.33559999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4R,5R,7R,7aS,8S,9R,11aS,11bS)-8-(1H-indol-3-yl)-4,7,11b-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.272   1.298   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.099  -0.197   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.011  -1.265   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.578  -0.623   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.877   0.255   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.806  -0.970   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.002  -2.077   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.081  -0.539   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       3.789   0.299   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       6.453   0.162   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.745  -0.676   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.666  -2.214   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.959  -3.051   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.295  -2.914   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.587  -3.752   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.216  -4.452   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       7.508  -5.290   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       4.844  -5.153   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.552  -4.315   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.313  -5.837   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.631  -2.777   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.214  -2.066   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.098  -3.127   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -0.417  -2.848   0.000  0.00  0.00           C+0
HETATM   25  N   UNK     0      -1.150  -4.202   0.000  0.00  0.00           N+0
HETATM   26  C   UNK     0      -0.089  -5.318   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -0.209  -6.853   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.061  -7.724   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.451  -7.060   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.570  -5.525   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.300  -4.654   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   22                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   14   21                                             
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12    7   15   16                                             
CONECT   15   14                                                            
CONECT   16   14   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19    7   22                                                  
CONECT   22   21    4   23                                                  
CONECT   23   22   24   31                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   23   26                                                  
MASTER        0    0    0    0    0    0    0    0   31    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₉NO₂

Average Mass

421.6250 Da

Monoisotopic Mass

421.29808 Da

IUPAC Name

(1S,4R,5R,7R,7aS,8S,9R,11aS,11bS)-8-(1H-indol-3-yl)-4,7,11b-trimethyl-9-(prop-1-en-2-yl)-dodecahydro-1H-cyclohexa[e]naphthalene-1,5-diol

Traditional Name

(1S,4R,5R,7R,7aS,8S,9R,11aS,11bS)-8-(1H-indol-3-yl)-4,7,11b-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol

CAS Registry Number

Not Available

SMILES

C[C@@H]1C[C@@H](O)[C@@]2(C)[C@H](C)CC[C@H](O)[C@]22CC[C@H]([C@@H]([C@H]12)C1=CNC2=CC=CC=C12)C(C)=C

InChI Identifier

InChI=1S/C28H39NO2/c1-16(2)19-12-13-28-23(30)11-10-18(4)27(28,5)24(31)14-17(3)26(28)25(19)21-15-29-22-9-7-6-8-20(21)22/h6-9,15,17-19,23-26,29-31H,1,10-14H2,2-5H3/t17-,18-,19+,23+,24-,25-,26+,27-,28+/m1/s1

InChI Key

KHMAONVROPNUDX-PHLGNYFESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
3-alkylindole
Indole
Indole or derivatives
Substituted pyrrole
Benzenoid
Cyclic alcohol
Pyrrole
Heteroaromatic compound
Secondary alcohol
Azacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organopnictogen compound
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Organic nitrogen compound
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.28	ChemAxon
pKa (Strongest Acidic)	14.37	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	56.25 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	126.34 m³·mol⁻¹	ChemAxon
Polarizability	49.33 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

124511202

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol (NP0315971)

MOL for NP0315971 ((1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol)

3D MOL for NP0315971 ((1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol)

3D SDF for NP0315971 ((1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol)

3D-SDF for NP0315971 ((1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol)

PDB for NP0315971 ((1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol)

3D PDB for NP0315971 ((1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol)

SMILES for NP0315971 ((1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol)

INCHI for NP0315971 ((1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol)

Structure for NP0315971 ((1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol)

3D Structure for NP0315971 ((1s,4r,4as,5r,7r,7as,8s,9r,11as)-8-(1h-indol-3-yl)-4,4a,7-trimethyl-9-(prop-1-en-2-yl)-dodecahydrocyclohexa[e]naphthalene-1,5-diol)