Record Information |
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Version | 2.0 |
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Created at | 2022-09-11 14:42:51 UTC |
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Updated at | 2022-09-11 14:42:51 UTC |
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NP-MRD ID | NP0315869 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | methymycin |
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Description | Methymycin belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. Thus, methymycin is considered to be a macrolide lipid molecule. methymycin is found in Streptomyces venezuelae. methymycin was first documented in 1954 (PMID: 24542881). Methymycin is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral (PMID: 11720530) (PMID: 5439233) (PMID: 19830295) (PMID: 23866020) (PMID: 20695498) (PMID: 10421766). |
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Structure | [H]\C1=C([H])/[C@](C)(O)[C@@]([H])(CC)OC(=O)[C@]([H])(C)[C@@]([H])(O[C@]2([H])O[C@]([H])(C)C[C@]([H])(N(C)C)[C@@]2([H])O)[C@@]([H])(C)C[C@@]([H])(C)C1=O InChI=1S/C25H43NO7/c1-9-20-25(6,30)11-10-19(27)14(2)12-15(3)22(17(5)23(29)32-20)33-24-21(28)18(26(7)8)13-16(4)31-24/h10-11,14-18,20-22,24,28,30H,9,12-13H2,1-8H3/b11-10+/t14-,15+,16-,17-,18+,20-,21-,22+,24+,25+/m1/s1 |
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Synonyms | Not Available |
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Chemical Formula | C25H43NO7 |
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Average Mass | 469.6114 Da |
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Monoisotopic Mass | 469.30395 Da |
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IUPAC Name | (3R,4S,5S,7R,9E,11S,12R)-4-{[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy}-12-ethyl-11-hydroxy-3,5,7,11-tetramethyl-1-oxacyclododec-9-ene-2,8-dione |
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Traditional Name | methymycin |
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CAS Registry Number | Not Available |
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SMILES | [H]\C1=C([H])/[C@](C)(O)[C@@]([H])(CC)OC(=O)[C@]([H])(C)[C@@]([H])(O[C@]2([H])O[C@]([H])(C)C[C@]([H])(N(C)C)[C@@]2([H])O)[C@@]([H])(C)C[C@@]([H])(C)C1=O |
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InChI Identifier | InChI=1S/C25H43NO7/c1-9-20-25(6,30)11-10-19(27)14(2)12-15(3)22(17(5)23(29)32-20)33-24-21(28)18(26(7)8)13-16(4)31-24/h10-11,14-18,20-22,24,28,30H,9,12-13H2,1-8H3/b11-10+/t14-,15+,16-,17-,18+,20-,21-,22+,24+,25+/m1/s1 |
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InChI Key | HUKYPYXOBINMND-HYUJHOPRSA-N |
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Experimental Spectra |
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| Not Available | Predicted Spectra |
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| Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 13C NMR Spectrum (1D, 25 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Chemical Shift Submissions |
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| Not Available | Species |
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Species of Origin | |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as aminoglycosides. These are molecules or a portion of a molecule composed of amino-modified sugars. |
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Kingdom | Organic compounds |
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Super Class | Organic oxygen compounds |
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Class | Organooxygen compounds |
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Sub Class | Carbohydrates and carbohydrate conjugates |
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Direct Parent | Aminoglycosides |
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Alternative Parents | |
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Substituents | - Aminoglycoside core
- Macrolide
- Oxane
- Tertiary alcohol
- 1,2-aminoalcohol
- Amino acid or derivatives
- Carboxylic acid ester
- Ketone
- Lactone
- Secondary alcohol
- Tertiary amine
- Tertiary aliphatic amine
- Cyclic ketone
- Monocarboxylic acid or derivatives
- Acetal
- Carboxylic acid derivative
- Organoheterocyclic compound
- Oxacycle
- Organopnictogen compound
- Amine
- Alcohol
- Organonitrogen compound
- Organic oxide
- Hydrocarbon derivative
- Organic nitrogen compound
- Carbonyl group
- Aliphatic heteromonocyclic compound
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Molecular Framework | Aliphatic heteromonocyclic compounds |
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External Descriptors | |
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Physical Properties |
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State | Not Available |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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General References | - Zhang Q, Sherman DH: Isolation and structure determination of novamethymycin, a new bioactive metabolite of the methymycin biosynthetic pathway in Streptomyces venezuelae. J Nat Prod. 2001 Nov;64(11):1447-50. doi: 10.1021/np010146r. [PubMed:11720530 ]
- Rickards RW, Smith RM: Macrolide antibiotic studies. 13. Partial absolute configurations of methymycin, neomethymycin, narbomycin and picromycin. Tetrahedron Lett. 1970 Mar;(13):1025-8. doi: 10.1016/s0040-4039(01)97897-9. [PubMed:5439233 ]
- Oh HS, Xuan R, Kang HY: Total synthesis of methymycin. Org Biomol Chem. 2009 Nov 7;7(21):4458-63. doi: 10.1039/b911200f. Epub 2009 Aug 18. [PubMed:19830295 ]
- Hansen DA, Rath CM, Eisman EB, Narayan AR, Kittendorf JD, Mortison JD, Yoon YJ, Sherman DH: Biocatalytic synthesis of pikromycin, methymycin, neomethymycin, novamethymycin, and ketomethymycin. J Am Chem Soc. 2013 Jul 31;135(30):11232-8. doi: 10.1021/ja404134f. Epub 2013 Jul 18. [PubMed:23866020 ]
- Borisova SA, Liu HW: Characterization of glycosyltransferase DesVII and its auxiliary partner protein DesVIII in the methymycin/picromycin biosynthetic pathway. Biochemistry. 2010 Sep 21;49(37):8071-84. doi: 10.1021/bi1007657. [PubMed:20695498 ]
- Tang L, Fu H, Betlach MC, McDaniel R: Elucidating the mechanism of chain termination switching in the picromycin/methymycin polyketide synthase. Chem Biol. 1999 Aug;6(8):553-8. doi: 10.1016/S1074-5521(99)80087-8. [PubMed:10421766 ]
- Xue Y, Wilson D, Sherman DH: Genetic architecture of the polyketide synthases for methymycin and pikromycin series macrolides. Gene. 2000 Mar 7;245(1):203-11. doi: 10.1016/s0378-1119(00)00003-2. [PubMed:10713461 ]
- Zhao L, Beyer NJ, Borisova SA, Liu HW: Beta-glucosylation as a part of self-resistance mechanism in methymycin/pikromycin producing strain Streptomyces venezuelae. Biochemistry. 2003 Dec 23;42(50):14794-804. doi: 10.1021/bi035501m. [PubMed:14674753 ]
- CHAVEZ MAX G, MENDEZ D: Preliminary report on the therapeutic action of methymycin in Brucella melitensis infection. Antibiot Chemother (Northfield). 1954 Jan;4(1):83-6. [PubMed:24542881 ]
- PERLMAN D: Chemical methods for determination of methymycin in fermentation samples. Antibiot Chemother (Northfield). 1954 Aug;4(8):859-63. [PubMed:24543211 ]
- PERLMAN D, O'BRIEN E: Microbiological production of methymycin and related antibiotics. Antibiot Chemother (Northfield). 1954 Aug;4(8):894-8. [PubMed:24543216 ]
- Manwaring DG, Rickards RW, Smith RM: Macrolide antibiotic studies. XIV. The total absolute configuration of methymycin. Tetrahedron Lett. 1970 Mar;(13):1029-32. doi: 10.1016/s0040-4039(01)97898-0. [PubMed:5439234 ]
- Xue Y, Wilson D, Zhao L, Liu Hw, Sherman DH: Hydroxylation of macrolactones YC-17 and narbomycin is mediated by the pikC-encoded cytochrome P450 in Streptomyces venezuelae. Chem Biol. 1998 Nov;5(11):661-7. doi: 10.1016/s1074-5521(98)90293-9. [PubMed:9831532 ]
- Graziani EI, Cane DE, Betlach MC, Kealey JT, McDaniel R: Macrolide biosynthesis: a single cytochrome P450, PicK, is responsible for the hydroxylations that generate methymycin, neomethymycin, and picromycin in Streptomyces venezuelae. Bioorg Med Chem Lett. 1998 Nov 17;8(22):3117-20. doi: 10.1016/s0960-894x(98)00553-8. [PubMed:9873687 ]
- LOTUS database [Link]
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