NP-MRD: Showing NP-Card for (3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one (NP0315846)

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Record Information

Version

2.0

Created at

2022-09-11 14:40:50 UTC

Updated at

2022-09-11 14:40:50 UTC

NP-MRD ID

NP0315846

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one

Description

Helinorbisabone belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring. Helinorbisabone is an extremely weak basic (essentially neutral) compound (based on its pKa). Outside of the human body, Helinorbisabone has been detected, but not quantified in, fats and oils. (3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one is found in Helianthus annuus. This could make helinorbisabone a potential biomarker for the consumption of these foods.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
    5.4316    0.0692   -0.2573 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6791   -1.0171    0.4013 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2399   -2.0822    0.7589 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2265   -0.8400    0.6448 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6081    0.2590    0.2816 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1573    0.4028    0.5409 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.9274    1.7391    0.8079 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3262   -0.0573   -0.6707 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6367   -1.5464   -0.8863 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1141    0.1441   -0.3671 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8565   -0.9691    0.0046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1845   -0.7776    0.3107 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9363   -1.8748    0.6825 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7831    0.4730    0.2571 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2297    0.5507    0.6093 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0492    1.5649   -0.1090 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7005    1.4006   -0.4253 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9294    2.4895   -0.8039 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0588    0.2791   -1.3012 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2785    0.9915    0.3734 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4997   -0.2213   -0.2871 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6648   -1.6280    1.1296 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1781    1.0517   -0.2077 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8784   -0.1888    1.4326 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6246    1.9067    1.7424 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5667    0.5342   -1.5677 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0047   -1.9567   -1.6916 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5856   -2.0928    0.0659 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6765   -1.6647   -1.2506 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4160   -1.9514    0.0544 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4994   -2.7819    0.7208 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7139    1.3421   -0.0023 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2956    0.9008    1.6742 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7389   -0.4288    0.5419 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5034    2.5536   -0.1570 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2893    3.4267   -0.8666 H   0  0  0  0  0  0  0  0  0  0  0  0
  9  8  1  0
  8  6  1  0
  6  7  1  0
  6  5  1  0
  5  4  2  0
  4  2  1  0
  2  1  1  0
  2  3  2  0
  8 10  1  0
 10 17  2  0
 17 18  1  0
 17 16  1  0
 16 14  2  0
 14 15  1  0
 14 12  1  0
 12 13  1  0
 12 11  2  0
 11 10  1  0
  9 27  1  0
  9 28  1  0
  9 29  1  0
  8 26  1  6
  6 24  1  1
  7 25  1  0
  5 23  1  0
  4 22  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
 18 36  1  0
 16 35  1  0
 15 32  1  0
 15 33  1  0
 15 34  1  0
 13 31  1  0
 11 30  1  0
M  END


  Mrv0541 05061306222D          

 18 18  0  0  0  0            999 V2000
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  5  4  2  0  0  0  0
  8  1  1  0  0  0  0
  8  6  2  0  0  0  0
  9  2  1  0  0  0  0
  9  4  1  0  0  0  0
 10  3  1  0  0  0  0
 11  7  1  0  0  0  0
 11 10  1  0  0  0  0
 12  5  1  0  0  0  0
 12 10  1  0  0  0  0
 13  7  2  0  0  0  0
 13  8  1  0  0  0  0
 14  6  1  0  0  0  0
 14 11  2  0  0  0  0
 15  9  2  0  0  0  0
 16 12  1  0  0  0  0
 17 13  1  0  0  0  0
 18 14  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0315846

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C(O)\C=C\C(C)=O)C1=C(O)C=C(C)C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C14H18O4/c1-8-6-14(18)11(7-13(8)17)10(3)12(16)5-4-9(2)15/h4-7,10,12,16-18H,1-3H3/b5-4+

> <INCHI_KEY>
QUWXRNSZOIJARN-SNAWJCMRSA-N

> <FORMULA>
C14H18O4

> <MOLECULAR_WEIGHT>
250.2903

> <EXACT_MASS>
250.120509064

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
26.681393961457164

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3E)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one

> <ALOGPS_LOGP>
1.97

> <JCHEM_LOGP>
2.312601618

> <ALOGPS_LOGS>
-2.64

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.904399229945337

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.08087454063762

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0667078249940625

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
70.80310000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.75e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3E)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000  -7.700   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -2.667  -7.700   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      -1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
CONECT    1    8                                                            
CONECT    2    9                                                            
CONECT    3   10                                                            
CONECT    4    5    9                                                       
CONECT    5    4   12                                                       
CONECT    6    8   14                                                       
CONECT    7   11   13                                                       
CONECT    8    1    6   13                                                  
CONECT    9    2    4   15                                                  
CONECT   10    3   11   12                                                  
CONECT   11    7   10   14                                                  
CONECT   12    5   10   16                                                  
CONECT   13    7    8   17                                                  
CONECT   14    6   11   18                                                  
CONECT   15    9                                                            
CONECT   16   12                                                            
CONECT   17   13                                                            
CONECT   18   14                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₄H₁₈O₄

Average Mass

250.2903 Da

Monoisotopic Mass

250.12051 Da

IUPAC Name

(3E)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one

Traditional Name

(3E)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one

CAS Registry Number

Not Available

SMILES

CC(C(O)\C=C\C(C)=O)C1=C(O)C=C(C)C(O)=C1

InChI Identifier

InChI=1S/C14H18O4/c1-8-6-14(18)11(7-13(8)17)10(3)12(16)5-4-9(2)15/h4-7,10,12,16-18H,1-3H3/b5-4+

InChI Key

QUWXRNSZOIJARN-SNAWJCMRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Helianthus annuus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as aromatic monoterpenoids. These are monoterpenoids containing at least one aromatic ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Aromatic monoterpenoids

Alternative Parents

Substituents

P-cymene
Aromatic monoterpenoid
Monocyclic monoterpenoid
Hydroquinone
M-cresol
O-cresol
1-hydroxy-2-unsubstituted benzenoid
Phenol
Toluene
Benzenoid
Monocyclic benzene moiety
Alpha,beta-unsaturated ketone
Enone
Acryloyl-group
Ketone
Secondary alcohol
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Alcohol
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.97	ALOGPS
logP	2.31	ChemAxon
logS	-2.6	ALOGPS
pKa (Strongest Acidic)	10.08	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	70.8 m³·mol⁻¹	ChemAxon
Polarizability	26.68 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0032116

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB008838

KNApSAcK ID

Not Available

Chemspider ID

8786036

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10610669

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one (NP0315846)

MOL for NP0315846 ((3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one)

3D MOL for NP0315846 ((3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one)

3D SDF for NP0315846 ((3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one)

3D-SDF for NP0315846 ((3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one)

PDB for NP0315846 ((3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one)

3D PDB for NP0315846 ((3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one)

SMILES for NP0315846 ((3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one)

INCHI for NP0315846 ((3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one)

Structure for NP0315846 ((3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one)

3D Structure for NP0315846 ((3e)-6-(2,5-dihydroxy-4-methylphenyl)-5-hydroxyhept-3-en-2-one)