NP-MRD: Showing NP-Card for 9-hydroxydeca-2,4-dienoic acid (NP0315601)

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Record Information

Version

1.0

Created at

2022-09-11 14:18:58 UTC

Updated at

2022-09-11 14:18:58 UTC

NP-MRD ID

NP0315601

Secondary Accession Numbers

None

Natural Product Identification

Common Name

9-hydroxydeca-2,4-dienoic acid

Description

9-Hydroxydecen-2-enic acid belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms. It was first documented in 2022 (PMID: 36122129). Based on a literature review a significant number of articles have been published on 9-hydroxydecen-2-enic acid (PMID: 36122121) (PMID: 36123115) (PMID: 36122940) (PMID: 36122933).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 29 28  0  0  0  0  0  0  0  0999 V2000
   -3.3005   -1.3423    0.7444 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3800    0.0742    0.3308 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7256    0.4187    0.0107 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4869    0.4297   -0.7901 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0299    0.2953   -0.5648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5050   -1.0503   -0.2537 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9938   -0.9788   -0.1055 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6438    0.1346   -0.2393 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1189    0.1554   -0.0847 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7757    1.2773   -0.2193 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2164    1.3063   -0.0699 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8931    2.3621   -0.1904 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8759    0.1186    0.2182 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8551   -1.5227    1.7639 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3972   -1.6692    0.9271 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8852   -2.0083   -0.0312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0734    0.6755    1.2340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6773    1.0738   -0.7401 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7126    1.5154   -1.0708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7974   -0.1236   -1.7334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6990    1.0085    0.2655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5029    0.7549   -1.4617 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7769   -1.7831   -1.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8336   -1.3458    0.7766 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4546   -1.9351    0.1192 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1595    1.0719   -0.4602 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6264   -0.7531    0.1360 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2341    2.1802   -0.4426 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6463   -0.3402    1.0952 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 13  1  0
 11 12  2  0
  1 14  1  0
  1 15  1  0
  1 16  1  0
  2 17  1  1
  3 18  1  0
  4 19  1  0
  4 20  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  6 24  1  0
  7 25  1  0
  8 26  1  0
  9 27  1  0
 10 28  1  0
 13 29  1  0
M  END

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       0.976   3.644   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.977   1.334   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.311   2.104   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.645   1.334   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.978   2.104   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.312   1.334   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      11.646   2.104   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      11.646   3.644   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0      12.979   1.334   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
MASTER        0    0    0    0    0    0    0    0   13    0   24    0
END

View in JSmol

Synonyms

Value	Source
9-Hydroxydecen-2-enate	Generator

Chemical Formula

C₁₀H₁₆O₃

Average Mass

184.2350 Da

Monoisotopic Mass

184.10994 Da

IUPAC Name

9-hydroxydeca-2,4-dienoic acid

Traditional Name

9-hydroxydeca-2,4-dienoic acid

CAS Registry Number

Not Available

SMILES

CC(O)CCCC=CC=CC(O)=O

InChI Identifier

InChI=1S/C10H16O3/c1-9(11)7-5-3-2-4-6-8-10(12)13/h2,4,6,8-9,11H,3,5,7H2,1H3,(H,12,13)

InChI Key

BUNUAXLBBKVLBE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Medium-chain fatty acids

Alternative Parents

Substituents

Medium-chain fatty acid
Hydroxy fatty acid
Unsaturated fatty acid
Secondary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.76	ChemAxon
pKa (Strongest Acidic)	4.62	ChemAxon
pKa (Strongest Basic)	-1.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	53.43 m³·mol⁻¹	ChemAxon
Polarizability	20.71 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

76031958

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

von Eckardstein A: High Density Lipoproteins: Is There a Comeback as a Therapeutic Target?. 2022. [PubMed:36122121 ]
Olie RH, van der Meijden PEJ, Spronk HMH, ten Cate H: Antithrombotic Therapy: Prevention and Treatment of Atherosclerosis and Atherothrombosis. 2022. [PubMed:36122129 ]
Gerrard A, Dawson C: Homocystinuria diagnosis and management: it is not all classical. J Clin Pathol. 2022 Sep 19. pii: jcp-2021-208029. doi: 10.1136/jcp-2021-208029. [PubMed:36123115 ]
Clarizio L, Springer NL, Zachariah TT: The Utility of Bile Acids for the Diagnosis of Liver Disease in Exotic Animals. Vet Clin North Am Exot Anim Pract. 2022 Sep;25(3):563-584. doi: 10.1016/j.cvex.2022.05.001. [PubMed:36122940 ]
Beura LK, Scott MC, Pierson MJ, Joag V, Wijeyesinghe S, Semler MR, Quarnstrom CF, Busman-Sahay K, Estes JD, Hamilton SE, Vezys V, O'Connor DH, Masopust D: Novel Lymphocytic Choriomeningitis Virus Strain Sustains Abundant Exhausted Progenitor CD8 T Cells without Systemic Viremia. J Immunol. 2022 Nov 1;209(9):1691-1702. doi: 10.4049/jimmunol.2200320. Epub 2022 Sep 19. [PubMed:36122933 ]
LOTUS database [Link]

Showing NP-Card for 9-hydroxydeca-2,4-dienoic acid (NP0315601)

MOL for NP0315601 (9-hydroxydeca-2,4-dienoic acid)

3D MOL for NP0315601 (9-hydroxydeca-2,4-dienoic acid)

3D SDF for NP0315601 (9-hydroxydeca-2,4-dienoic acid)

3D-SDF for NP0315601 (9-hydroxydeca-2,4-dienoic acid)

PDB for NP0315601 (9-hydroxydeca-2,4-dienoic acid)

3D PDB for NP0315601 (9-hydroxydeca-2,4-dienoic acid)

SMILES for NP0315601 (9-hydroxydeca-2,4-dienoic acid)

INCHI for NP0315601 (9-hydroxydeca-2,4-dienoic acid)

Structure for NP0315601 (9-hydroxydeca-2,4-dienoic acid)

3D Structure for NP0315601 (9-hydroxydeca-2,4-dienoic acid)