NP-MRD: Showing NP-Card for 10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate (NP0314959)

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Record Information

Version

2.0

Created at

2022-09-11 13:20:49 UTC

Updated at

2022-09-11 13:20:49 UTC

NP-MRD ID

NP0314959

Secondary Accession Numbers

None

Natural Product Identification

Common Name

10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate

Description

10-Formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]Icosan-7-yl acetate belongs to the class of organic compounds known as steroid esters. Steroid esters are compounds containing a steroid moiety which bears a carboxylic acid ester group. 10-Formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]Icosan-7-yl acetate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004201500192D          

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M  END

     RDKit          3D

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M  END


  Mrv1533004201500192D          

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  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  3  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  4  0  0  0
 12 13  2  0  0  0  0
 10 14  1  0  0  0  0
  8 15  1  0  0  0  0
  5 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
  5 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 19 30  1  0  0  0  0
 23 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 26 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 34 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0314959

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1OC23CCC(C1C(O)=CC=O)C2(C)CCC1C3CCC2(O)CC(CC(O)C12C=O)OC(C)=O

> <INCHI_IDENTIFIER>
InChI=1S/C27H38O9/c1-15(30)35-16-12-21(32)26(14-29)17-4-8-24(2)19-6-10-27(24,18(17)5-9-25(26,33)13-16)36-23(34-3)22(19)20(31)7-11-28/h7,11,14,16-19,21-23,31-33H,4-6,8-10,12-13H2,1-3H3

> <INCHI_KEY>
VAYKPMWIXVFSTN-UHFFFAOYSA-N

> <FORMULA>
C27H38O9

> <MOLECULAR_WEIGHT>
506.592

> <EXACT_MASS>
506.251582804

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
53.491565473402844

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate

> <ALOGPS_LOGP>
1.43

> <JCHEM_LOGP>
0.12028974266666645

> <ALOGPS_LOGS>
-3.43

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.856810769443598

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.789265263975057

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0780705704559432

> <JCHEM_POLAR_SURFACE_AREA>
139.59000000000003

> <JCHEM_REFRACTIVITY>
128.06339999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.90e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 20-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-APR-15         0                                  
HETATM    1  C   UNK     0      -0.815  -2.750   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -1.046  -1.227   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       0.157  -0.266   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       1.545  -0.932   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.932  -0.262   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.273   1.240   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.311   2.442   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.771   2.440   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.188   1.235   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.690   1.576   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.145   3.047   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.647   3.388   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -4.103   4.859   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -2.736   0.446   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.291   1.138   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.061   0.211   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.182   2.393   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.716   2.248   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.357   0.848   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.465  -0.407   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.106  -1.807   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.639  -1.952   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       7.531  -0.697   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       8.173  -2.097   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       9.064  -0.841   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.956   0.414   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       9.315   1.814   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.782   1.959   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       7.141   3.359   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       6.890   0.704   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       6.249   2.104   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       6.233   3.644   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0      11.490   0.269   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      12.382   1.525   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      11.740   2.925   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      13.915   1.380   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    9                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   15   20                                             
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   15                                                  
CONECT    9    8    3   10                                                  
CONECT   10    9   11   14                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14   10                                                            
CONECT   15    8    5   16   17                                             
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   30                                                  
CONECT   20   19    5   21                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   25   30                                             
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27   33                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   19   23   31                                             
CONECT   31   30   32                                                       
CONECT   32   31                                                            
CONECT   33   26   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   80    0
END

View in JSmol

Synonyms

Value	Source
10-Formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0,.0,.0,]icosan-7-yl acetic acid	Generator
10-Formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetic acid	Generator

Chemical Formula

C₂₇H₃₈O₉

Average Mass

506.5920 Da

Monoisotopic Mass

506.25158 Da

IUPAC Name

10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate

Traditional Name

10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate

CAS Registry Number

Not Available

SMILES

COC1OC23CCC(C1C(O)=CC=O)C2(C)CCC1C3CCC2(O)CC(CC(O)C12C=O)OC(C)=O

InChI Identifier

InChI=1S/C27H38O9/c1-15(30)35-16-12-21(32)26(14-29)17-4-8-24(2)19-6-10-27(24,18(17)5-9-25(26,33)13-16)36-23(34-3)22(19)20(31)7-11-28/h7,11,14,16-19,21-23,31-33H,4-6,8-10,12-13H2,1-3H3

InChI Key

VAYKPMWIXVFSTN-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroid esters. Steroid esters are compounds containing a steroid moiety which bears a carboxylic acid ester group.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid esters

Direct Parent

Steroid esters

Alternative Parents

Substituents

Steroid ester
19-oxosteroid
Oxosteroid
Naphthopyran
Naphthalene
Oxepane
Oxane
Pyran
Alpha,beta-unsaturated aldehyde
Cyclic alcohol
Enal
Vinylogous acid
Tertiary alcohol
Carboxylic acid ester
Secondary alcohol
Organoheterocyclic compound
Oxacycle
Monocarboxylic acid or derivatives
Enol
Acetal
Carboxylic acid derivative
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Aldehyde
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.43	ALOGPS
logP	0.12	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	8.79	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	139.59 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	128.06 m³·mol⁻¹	ChemAxon
Polarizability	53.49 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate (NP0314959)

MOL for NP0314959 (10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate)

3D MOL for NP0314959 (10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate)

3D SDF for NP0314959 (10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate)

3D-SDF for NP0314959 (10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate)

PDB for NP0314959 (10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate)

3D PDB for NP0314959 (10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate)

SMILES for NP0314959 (10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate)

INCHI for NP0314959 (10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate)

Structure for NP0314959 (10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate)

3D Structure for NP0314959 (10-formyl-5,9-dihydroxy-16-(1-hydroxy-3-oxoprop-1-en-1-yl)-17-methoxy-14-methyl-18-oxapentacyclo[13.3.2.0¹,¹⁴.0²,¹¹.0⁵,¹⁰]icosan-7-yl acetate)