NP-MRD: Showing NP-Card for (2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid (NP0314736)

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Record Information

Version

2.0

Created at

2022-09-11 12:59:40 UTC

Updated at

2022-09-11 12:59:40 UTC

NP-MRD ID

NP0314736

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid

Description

Carmabin A belongs to the class of organic compounds known as peptides. Peptides are compounds containing an amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another. (2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid was first documented in 2007 (PMID: 17441769). Based on a literature review a small amount of articles have been published on carmabin A (PMID: 30227592) (PMID: 29779667).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112214592D          

 51 52  0  0  1  0            999 V2000
   -1.9618  -13.8677    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3381  -13.3276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145  -12.7875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0651  -13.0575    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6887  -12.5175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4683  -12.7875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0919  -12.2474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9360  -11.4373    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8715  -12.5175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4951  -11.9774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3392  -11.1672    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2747  -12.2474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4306  -13.0575    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8983  -11.7073    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7424  -10.8972    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   10.0433   -8.1967    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  3  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
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 12 13  2  0  0  0  0
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 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 18 23  1  0  0  0  0
 16 24  1  0  0  0  0
 24 25  1  4  0  0  0
 24 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  6  0  0  0
 27 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  1  0  0  0
 33 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
 37 38  1  0  0  0  0
 39 37  1  1  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  2  0  0  0  0
 42 43  1  0  0  0  0
 43 44  2  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 44 47  1  0  0  0  0
 47 48  2  0  0  0  0
 41 48  1  0  0  0  0
 39 49  1  0  0  0  0
 49 50  2  0  0  0  0
 49 51  1  0  0  0  0
M  END

     RDKit          3D

108109  0  0  0  0  0  0  0  0999 V2000
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    7.7972   -1.6398    1.0813 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652309112214592D          

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    6.1456  -10.6271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0810  -11.7073    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
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    8.9520  -10.0871    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.6401   -8.4668    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4197   -8.7368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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    9.5756   -5.7663    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4197   -4.9562    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0433   -4.4161    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8229   -4.6862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4465   -4.1461    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.2906   -3.3359    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.9788   -5.4963    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.3552   -6.0364    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.8874   -7.3866    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5111   -6.8465    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   10.0433   -8.1967    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  3  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 16 14  1  6  0  0  0
 16 17  1  0  0  0  0
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 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 18 23  1  0  0  0  0
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 24 25  1  4  0  0  0
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 27 29  1  0  0  0  0
 29 30  2  0  0  0  0
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 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  1  0  0  0
 33 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
 37 38  1  0  0  0  0
 39 37  1  1  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  2  0  0  0  0
 42 43  1  0  0  0  0
 43 44  2  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 44 47  1  0  0  0  0
 47 48  2  0  0  0  0
 41 48  1  0  0  0  0
 39 49  1  0  0  0  0
 49 50  2  0  0  0  0
 49 51  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0314736

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C(C[C@H](N(C)C(=O)[C@H](C)N(C)C(=O)[C@H](C)N=C(O)[C@H](CC2=CC=CC=C2)N(C)C(=O)C(C)CC(C)CCCCC#C)C(O)=N)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C40H57N5O6/c1-10-11-12-14-17-27(2)24-28(3)38(48)45(8)35(26-31-18-15-13-16-19-31)37(47)42-29(4)39(49)43(6)30(5)40(50)44(7)34(36(41)46)25-32-20-22-33(51-9)23-21-32/h1,13,15-16,18-23,27-30,34-35H,11-12,14,17,24-26H2,2-9H3,(H2,41,46)(H,42,47)/t27?,28?,29-,30-,34-,35-/m0/s1

> <INCHI_KEY>
BRWIYXLUWTZWGU-PBQPNXEGSA-N

> <FORMULA>
C40H57N5O6

> <MOLECULAR_WEIGHT>
703.925

> <EXACT_MASS>
703.430884575

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
108

> <JCHEM_AVERAGE_POLARIZABILITY>
76.6451843005985

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-N-[(1S)-1-{[(1S)-1-{[(1S)-1-(C-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(N,2,4-trimethyldec-9-ynamido)propanimidic acid

> <JCHEM_LOGP>
3.4449852606383753

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
4.676506031875727

> <JCHEM_PKA_STRONGEST_ACIDIC>
-1.8808926143898406

> <JCHEM_PKA_STRONGEST_BASIC>
12.653205694957043

> <JCHEM_POLAR_SURFACE_AREA>
146.82999999999998

> <JCHEM_REFRACTIVITY>
209.92369999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
20

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-N-[(1S)-1-{[(1S)-1-{[(1S)-1-(C-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(N,2,4-trimethyldec-9-ynamido)propanimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0      -3.662 -25.886   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.498 -24.878   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.334 -23.870   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.121 -24.374   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.286 -23.366   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.741 -23.870   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.905 -22.862   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.614 -21.350   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.360 -23.366   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.524 -22.358   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.233 -20.846   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.979 -22.862   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       8.270 -24.374   0.000  0.00  0.00           O+0
HETATM   14  N   UNK     0       9.143 -21.854   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0       8.852 -20.341   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.599 -22.358   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      10.890 -23.870   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      12.345 -24.374   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      13.509 -23.366   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      14.964 -23.870   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      15.255 -25.382   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      14.091 -26.390   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      12.636 -25.886   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      11.763 -21.350   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      11.472 -19.837   0.000  0.00  0.00           O+0
HETATM   26  N   UNK     0      13.218 -21.854   0.000  0.00  0.00           N+0
HETATM   27  C   UNK     0      14.382 -20.846   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      15.837 -21.350   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      14.091 -19.333   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      12.636 -18.829   0.000  0.00  0.00           O+0
HETATM   31  N   UNK     0      15.255 -18.325   0.000  0.00  0.00           N+0
HETATM   32  C   UNK     0      16.710 -18.829   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      14.964 -16.813   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      13.509 -16.309   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      16.128 -15.805   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      17.583 -16.309   0.000  0.00  0.00           O+0
HETATM   37  N   UNK     0      15.837 -14.292   0.000  0.00  0.00           N+0
HETATM   38  C   UNK     0      14.382 -13.788   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      17.001 -13.284   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      16.710 -11.772   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      17.874 -10.764   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      17.583  -9.252   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0      18.748  -8.243   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      20.203  -8.748   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      21.367  -7.739   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      21.076  -6.227   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      20.494 -10.260   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      19.330 -11.268   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      18.457 -13.788   0.000  0.00  0.00           C+0
HETATM   50  N   UNK     0      19.621 -12.780   0.000  0.00  0.00           N+0
HETATM   51  O   UNK     0      18.748 -15.301   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   24                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   23                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   18                                                       
CONECT   24   16   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37   40   49                                                  
CONECT   40   39   41                                                       
CONECT   41   40   42   48                                                  
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43   45   47                                                  
CONECT   45   44   46                                                       
CONECT   46   45                                                            
CONECT   47   44   48                                                       
CONECT   48   47   41                                                       
CONECT   49   39   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49                                                            
MASTER        0    0    0    0    0    0    0    0   51    0  104    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₄₀H₅₇N₅O₆

Average Mass

703.9250 Da

Monoisotopic Mass

703.43088 Da

IUPAC Name

(2S)-N-[(1S)-1-{[(1S)-1-{[(1S)-1-(C-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(N,2,4-trimethyldec-9-ynamido)propanimidic acid

Traditional Name

(2S)-N-[(1S)-1-{[(1S)-1-{[(1S)-1-(C-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(N,2,4-trimethyldec-9-ynamido)propanimidic acid

CAS Registry Number

Not Available

SMILES

COC1=CC=C(C[C@H](N(C)C(=O)[C@H](C)N(C)C(=O)[C@H](C)N=C(O)[C@H](CC2=CC=CC=C2)N(C)C(=O)C(C)CC(C)CCCCC#C)C(O)=N)C=C1

InChI Identifier

InChI=1S/C40H57N5O6/c1-10-11-12-14-17-27(2)24-28(3)38(48)45(8)35(26-31-18-15-13-16-19-31)37(47)42-29(4)39(49)43(6)30(5)40(50)44(7)34(36(41)46)25-32-20-22-33(51-9)23-21-32/h1,13,15-16,18-23,27-30,34-35H,11-12,14,17,24-26H2,2-9H3,(H2,41,46)(H,42,47)/t27?,28?,29-,30-,34-,35-/m0/s1

InChI Key

BRWIYXLUWTZWGU-PBQPNXEGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as peptides. Peptides are compounds containing an amide derived from two or more amino carboxylic acid molecules (the same or different) by formation of a covalent bond from the carbonyl carbon of one to the nitrogen atom of another.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Peptides

Alternative Parents

Substituents

Alpha peptide
Phenylalanine or derivatives
N-acyl-alpha amino acid or derivatives
Alpha-amino acid amide
Alanine or derivatives
Alpha-amino acid or derivatives
Amphetamine or derivatives
Phenoxy compound
Anisole
Phenol ether
Methoxybenzene
Alkyl aryl ether
Benzenoid
Fatty acyl
Monocyclic benzene moiety
Fatty amide
N-acyl-amine
Tertiary carboxylic acid amide
Secondary carboxylic acid amide
Primary carboxylic acid amide
Carboxamide group
Acetylide
Ether
Organonitrogen compound
Carbonyl group
Organooxygen compound
Organic nitrogen compound
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Organopnictogen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

peptide (CHEBI:65582 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.44	ChemAxon
pKa (Strongest Acidic)	-1.9	ChemAxon
pKa (Strongest Basic)	12.65	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	146.83 Å²	ChemAxon
Rotatable Bond Count	20	ChemAxon
Refractivity	209.92 m³·mol⁻¹	ChemAxon
Polarizability	76.65 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00038706

Chemspider ID

23076292

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

16757536

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

McPhail KL, Correa J, Linington RG, Gonzalez J, Ortega-Barria E, Capson TL, Gerwick WH: Antimalarial linear lipopeptides from a Panamanian strain of the marine cyanobacterium Lyngbya majuscula. J Nat Prod. 2007 Jun;70(6):984-8. doi: 10.1021/np0700772. Epub 2007 Apr 19. [PubMed:17441769 ]
Ye B, Jiang P, Zhang T, Sun Y, Hao X, Cui Y, Wang L, Chen Y: Total Synthesis of the Highly N-Methylated Peptides Carmabin A and Dragomabin. Mar Drugs. 2018 Sep 17;16(9):338. doi: 10.3390/md16090338. [PubMed:30227592 ]
Zhu X, Zhang W: Terminal Alkyne Biosynthesis in Marine Microbes. Methods Enzymol. 2018;604:89-112. doi: 10.1016/bs.mie.2018.01.040. Epub 2018 Mar 12. [PubMed:29779667 ]
LOTUS database [Link]

Showing NP-Card for (2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid (NP0314736)

MOL for NP0314736 ((2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid)

3D MOL for NP0314736 ((2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid)

3D SDF for NP0314736 ((2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid)

3D-SDF for NP0314736 ((2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid)

PDB for NP0314736 ((2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid)

3D PDB for NP0314736 ((2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid)

SMILES for NP0314736 ((2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid)

INCHI for NP0314736 ((2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid)

Structure for NP0314736 ((2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid)

3D Structure for NP0314736 ((2s)-n-[(1s)-1-{[(1s)-1-{[(1s)-1-(c-hydroxycarbonimidoyl)-2-(4-methoxyphenyl)ethyl](methyl)carbamoyl}ethyl](methyl)carbamoyl}ethyl]-3-phenyl-2-(n,2,4-trimethyldec-9-ynamido)propanimidic acid)