NP-MRD: Showing NP-Card for (1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol (NP0314539)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-11 12:41:11 UTC

Updated at

2022-09-11 12:41:11 UTC

NP-MRD ID

NP0314539

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol

Description

Cyanthiwigin J belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. (1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol is found in Myrmekioderma rea. Based on a literature review very few articles have been published on Cyanthiwigin J.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309112214412D          

 23 26  0  0  1  0            999 V2000
    2.2660   -3.5572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8428   -2.9674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6420   -3.1721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6205   -2.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8471   -1.8858    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8812   -1.0615    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2343   -0.5494    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6757   -0.8392    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1494   -0.2038    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0421   -0.1000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5851    0.5869    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8654   -0.0477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3223   -0.7346    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6325    0.0299    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1287   -0.5602    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7678   -1.0819    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4775   -1.5025    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7584   -1.9069    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.2154   -2.5937    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1076   -2.4139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3054   -2.2211    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9559   -1.4738    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1326   -1.5261    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  1  0  0  0
 17 18  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  6  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 22 21  1  6  0  0  0
 13 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23  4  1  1  0  0  0
  8 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0314539

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C1=C[C@H](O)[C@]2(C)[C@H]1[C@H]1CC[C@]3(C)O[C@@H]3C[C@]1(C)C[C@@H]2O

> <INCHI_IDENTIFIER>
InChI=1S/C20H32O3/c1-11(2)12-8-14(21)20(5)15(22)9-18(3)10-16-19(4,23-16)7-6-13(18)17(12)20/h8,11,13-17,21-22H,6-7,9-10H2,1-5H3/t13-,14+,15+,16-,17-,18+,19+,20+/m1/s1

> <INCHI_KEY>
FAFDFQFBHSBAGX-GZZXEUMKSA-N

> <FORMULA>
C20H32O3

> <MOLECULAR_WEIGHT>
320.473

> <EXACT_MASS>
320.23514489

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
37.137914368626504

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2S,5S,6R,7S,9S,11R,13S)-6,9,13-trimethyl-3-(propan-2-yl)-12-oxatetracyclo[7.6.0.0^{2,6}.0^{11,13}]pentadec-3-ene-5,7-diol

> <JCHEM_LOGP>
2.554376279

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.838502522087374

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.070536142000705

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9800535364211154

> <JCHEM_POLAR_SURFACE_AREA>
52.99

> <JCHEM_REFRACTIVITY>
91.13449999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,5S,6R,7S,9S,11R,13S)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0^{2,6}.0^{11,13}]pentadec-3-ene-5,7-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0       4.230  -6.640   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.307  -5.539   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.798  -5.921   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.892  -4.056   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.448  -3.520   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.512  -1.981   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       2.304  -1.026   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       4.995  -1.566   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.012  -0.380   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.679  -0.187   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       4.826   1.096   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       7.215  -0.089   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.068  -1.371   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.647   0.056   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.574  -1.046   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.767  -2.020   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      12.091  -2.805   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      10.749  -3.559   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      11.602  -4.842   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.534  -4.506   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.037  -4.146   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.384  -2.751   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.848  -2.849   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   23                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10   23                                             
CONECT    9    8                                                            
CONECT   10    8   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   15   22                                             
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16   18                                                       
CONECT   18   17   16   19   20                                             
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   13   23                                                  
CONECT   23   22    4    8                                                  
MASTER        0    0    0    0    0    0    0    0   23    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₂O₃

Average Mass

320.4730 Da

Monoisotopic Mass

320.23514 Da

IUPAC Name

(1R,2S,5S,6R,7S,9S,11R,13S)-6,9,13-trimethyl-3-(propan-2-yl)-12-oxatetracyclo[7.6.0.0^{2,6}.0^{11,13}]pentadec-3-ene-5,7-diol

Traditional Name

(1R,2S,5S,6R,7S,9S,11R,13S)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0^{2,6}.0^{11,13}]pentadec-3-ene-5,7-diol

CAS Registry Number

Not Available

SMILES

CC(C)C1=C[C@H](O)[C@]2(C)[C@H]1[C@H]1CC[C@]3(C)O[C@@H]3C[C@]1(C)C[C@@H]2O

InChI Identifier

InChI=1S/C20H32O3/c1-11(2)12-8-14(21)20(5)15(22)9-18(3)10-16-19(4,23-16)7-6-13(18)17(12)20/h8,11,13-17,21-22H,6-7,9-10H2,1-5H3/t13-,14+,15+,16-,17-,18+,19+,20+/m1/s1

InChI Key

FAFDFQFBHSBAGX-GZZXEUMKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Myrmekioderma rea	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
Cyclic alcohol
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.55	ChemAxon
pKa (Strongest Acidic)	14.07	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	52.99 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	91.13 m³·mol⁻¹	ChemAxon
Polarizability	37.14 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9998026

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11823375

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol (NP0314539)

MOL for NP0314539 ((1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol)

3D MOL for NP0314539 ((1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol)

3D SDF for NP0314539 ((1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol)

3D-SDF for NP0314539 ((1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol)

PDB for NP0314539 ((1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol)

3D PDB for NP0314539 ((1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol)

SMILES for NP0314539 ((1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol)

INCHI for NP0314539 ((1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol)

Structure for NP0314539 ((1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol)

3D Structure for NP0314539 ((1r,2s,5s,6r,7s,9s,11r,13s)-3-isopropyl-6,9,13-trimethyl-12-oxatetracyclo[7.6.0.0²,⁶.0¹¹,¹³]pentadec-3-ene-5,7-diol)