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Record Information
Version2.0
Created at2022-09-11 11:33:59 UTC
Updated at2022-09-11 11:33:59 UTC
NP-MRD IDNP0313799
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1s,2s,4r,12s,13r,15r,18r)-2-bromo-8-[(2r,3s)-1,1-dichloro-3-hydroxy-3-[(2r,4r)-4-methyl-5-oxooxolan-2-yl]propan-2-yl]-18-hydroxy-9,13-dimethyl-17,19-dioxapentacyclo[13.3.1.0¹,¹³.0⁴,¹².0⁵,¹⁰]nonadeca-5(10),6,8-trien-11-one
DescriptionNakiterpiosin belongs to the class of organic compounds known as fluorenes. Fluorenes are compounds containing a fluorene moiety, which consists of two benzene rings connected through either a cyclopentane, cyclopentene, or cyclopenta-1,3-diene. (1s,2s,4r,12s,13r,15r,18r)-2-bromo-8-[(2r,3s)-1,1-dichloro-3-hydroxy-3-[(2r,4r)-4-methyl-5-oxooxolan-2-yl]propan-2-yl]-18-hydroxy-9,13-dimethyl-17,19-dioxapentacyclo[13.3.1.0¹,¹³.0⁴,¹².0⁵,¹⁰]nonadeca-5(10),6,8-trien-11-one is found in Terpios hoshinota. (1s,2s,4r,12s,13r,15r,18r)-2-bromo-8-[(2r,3s)-1,1-dichloro-3-hydroxy-3-[(2r,4r)-4-methyl-5-oxooxolan-2-yl]propan-2-yl]-18-hydroxy-9,13-dimethyl-17,19-dioxapentacyclo[13.3.1.0¹,¹³.0⁴,¹².0⁵,¹⁰]nonadeca-5(10),6,8-trien-11-one was first documented in 2009 (PMID: 18998640). Based on a literature review a significant number of articles have been published on Nakiterpiosin (PMID: 35511195) (PMID: 23226922) (PMID: 21139045) (PMID: 20597501) (PMID: 20000429).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC27H31BrCl2O7
Average Mass618.3400 Da
Monoisotopic Mass616.06302 Da
IUPAC Name(1S,2S,4R,12S,13R,15R,18R)-2-bromo-8-[(2R,3S)-1,1-dichloro-3-hydroxy-3-[(2R,4R)-4-methyl-5-oxooxolan-2-yl]propan-2-yl]-18-hydroxy-9,13-dimethyl-17,19-dioxapentacyclo[13.3.1.0^{1,13}.0^{4,12}.0^{5,10}]nonadeca-5(10),6,8-trien-11-one
Traditional Name(1S,2S,4R,12S,13R,15R,18R)-2-bromo-8-[(2R,3S)-1,1-dichloro-3-hydroxy-3-[(2R,4R)-4-methyl-5-oxooxolan-2-yl]propan-2-yl]-18-hydroxy-9,13-dimethyl-17,19-dioxapentacyclo[13.3.1.0^{1,13}.0^{4,12}.0^{5,10}]nonadeca-5(10),6,8-trien-11-one
CAS Registry NumberNot Available
SMILES
C[C@@H]1C[C@@H](OC1=O)[C@@H](O)[C@H](C(Cl)Cl)C1=C(C)C2=C(C=C1)[C@@H]1C[C@H](Br)[C@]34O[C@H](C[C@]3(C)[C@H]1C2=O)CO[C@H]4O
InChI Identifier
InChI=1S/C27H31BrCl2O7/c1-10-6-16(36-24(10)33)21(31)19(23(29)30)13-4-5-14-15-7-17(28)27-25(34)35-9-12(37-27)8-26(27,3)20(15)22(32)18(14)11(13)2/h4-5,10,12,15-17,19-21,23,25,31,34H,6-9H2,1-3H3/t10-,12-,15+,16-,17+,19-,20-,21-,25-,26-,27-/m1/s1
InChI KeyZZCVHHDIBFSYFY-GWWWHUEBSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Terpios hoshinotaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fluorenes. Fluorenes are compounds containing a fluorene moiety, which consists of two benzene rings connected through either a cyclopentane, cyclopentene, or cyclopenta-1,3-diene.
KingdomOrganic compounds
Super ClassBenzenoids
ClassFluorenes
Sub ClassNot Available
Direct ParentFluorenes
Alternative Parents
Substituents
  • Fluorene
  • Indanone
  • Indane
  • Aryl alkyl ketone
  • Aryl ketone
  • Oxepane
  • Para-dioxane
  • Gamma butyrolactone
  • Oxolane
  • Carboxylic acid ester
  • Hemiacetal
  • Ketone
  • Lactone
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Dialkyl ether
  • Organoheterocyclic compound
  • Oxacycle
  • Ether
  • Alkyl halide
  • Hydrocarbon derivative
  • Organic oxide
  • Alcohol
  • Alkyl bromide
  • Organic oxygen compound
  • Alkyl chloride
  • Carbonyl group
  • Organohalogen compound
  • Organobromide
  • Organochloride
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.26ChemAxon
pKa (Strongest Acidic)11.2ChemAxon
pKa (Strongest Basic)-3.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area102.29 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity139.93 m³·mol⁻¹ChemAxon
Polarizability58.14 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID10140537
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11966550
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Matsuyuki Y, Fukaya K, Urabe D: RCM approach to the CDE-tricyclic structure of nakiterpiosin. Biosci Biotechnol Biochem. 2022 Jun 25;86(7):832-836. doi: 10.1093/bbb/zbac061. [PubMed:35511195 ]
  2. Gao S, Wang Q, Wang G, Lomenick B, Liu J, Fan CW, Deng LW, Huang J, Lum L, Chen C: The Chemistry and Biology of Nakiterpiosin - C-nor-D-Homosteroids. Synlett. 2012 Oct;16(23):2298-2310. doi: 10.1055/s-0031-1290460. [PubMed:23226922 ]
  3. Wei JH, Seemann J: Nakiterpiosin targets tubulin and triggers mitotic catastrophe in human cancer cells. Mol Cancer Ther. 2010 Dec;9(12):3375-85. doi: 10.1158/1535-7163.MCT-10-0305. Epub 2010 Dec 7. [PubMed:21139045 ]
  4. Heretsch P, Rabe S, Giannis A: A biomimetic approach to C-nor-D-homo-steroids. J Am Chem Soc. 2010 Jul 28;132(29):9968-9. doi: 10.1021/ja103152k. [PubMed:20597501 ]
  5. Gao S, Wang Q, Huang LJ, Lum L, Chen C: Chemical and biological studies of nakiterpiosin and nakiterpiosinone. J Am Chem Soc. 2010 Jan 13;132(1):371-83. doi: 10.1021/ja908626k. [PubMed:20000429 ]
  6. Gao S, Wang Q, Chen C: Synthesis and structure revision of nakiterpiosin. J Am Chem Soc. 2009 Feb 4;131(4):1410-2. doi: 10.1021/ja808110d. [PubMed:18998640 ]
  7. LOTUS database [Link]