NP-MRD: Showing NP-Card for (2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate (NP0313625)

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Record Information

Version

2.0

Created at

2022-09-11 11:18:25 UTC

Updated at

2022-09-11 11:18:25 UTC

NP-MRD ID

NP0313625

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate

Description

Chionoside B belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds. (2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate is found in Veronica thomsonii. Based on a literature review very few articles have been published on Chionoside B.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112213182D          

 56 60  0  0  1  0            999 V2000
   -2.1434    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0013   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158   -1.6500    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4302   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4302   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.4302   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1447   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1447   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8592   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5737   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2881   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2881   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0026   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7171   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4315   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7171   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4315   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4315   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0026   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0013   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4302   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1447   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.8592   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5737   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1447   -4.9500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.8592   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4302   -5.3625    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.4302   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158   -4.9500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0013   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5724   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8579   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 26 29  2  0  0  0  0
 21 29  1  0  0  0  0
 15 30  1  0  0  0  0
 30 31  1  1  0  0  0
 32 31  1  1  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  1  0  0  0
 35 36  1  0  0  0  0
 34 37  1  0  0  0  0
 37 38  1  6  0  0  0
 37 39  1  0  0  0  0
 39 40  1  1  0  0  0
 39 41  1  0  0  0  0
 32 41  1  0  0  0  0
 41 42  1  6  0  0  0
 30 43  1  0  0  0  0
 10 43  1  0  0  0  0
 43 44  1  6  0  0  0
 45 44  1  1  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  1  0  0  0
 48 50  1  0  0  0  0
 50 51  1  1  0  0  0
 50 52  1  0  0  0  0
 45 52  1  0  0  0  0
 52 53  1  6  0  0  0
  6 54  1  0  0  0  0
 54 55  2  0  0  0  0
  3 55  1  0  0  0  0
 55 56  1  0  0  0  0
M  END

     RDKit          3D

104108  0  0  0  0  0  0  0  0999 V2000
   -2.6377   -7.0587   -1.3103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7232   -6.4258   -1.9380 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1206   -5.1763   -1.5143 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5223   -4.4772   -0.4927 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9396   -3.2307   -0.0874 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0042   -2.5960   -0.6919 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4863   -1.2969   -0.2780 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1579   -0.0916   -1.0163 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9391    0.4091   -1.2451 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0961    0.6015   -0.1900 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.5526    1.8448    0.4713 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7940    1.7746    1.6662 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4722    2.4723    2.8033 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7253    1.9219    3.0846 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4998    2.6112    1.2647 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5840    2.5390    2.2126 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1986    2.5759    3.1682 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2237    3.4272    4.1005 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4721    1.9330    3.5652 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1452    1.1899    2.7479 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3930    0.4825    2.9915 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8225    0.2656    4.2954 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0048   -0.3677    4.5656 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8515   -0.8303    3.5258 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9805   -1.4361    3.8164 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4073   -0.6005    2.2242 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2902   -1.0675    1.2367 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.1049    2.1867   -0.0732 C   0  0  2  0  0  0  0  0  0  0  0  0
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   -0.4288    5.1006   -1.3620 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7913    5.6384   -1.7623 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7354    7.1301   -1.9333 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4003    7.7645   -0.7245 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2662    4.9975   -3.0556 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1395    3.9797   -2.7774 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.5795    5.6694   -4.4404 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7546    3.6213   -3.1538 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4858    2.2871   -3.5105 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6759    0.8007   -0.4076 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8848   -0.1279    0.2973 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0872   -0.8546   -0.6013 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2145   -0.7077   -0.1626 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1031   -1.1269   -1.0999 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6457   -2.4741   -1.6329 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7650   -3.2739   -1.8856 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.4133   -2.7394    0.7371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2368   -1.1997    0.8387 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6314   -1.3780   -0.2128 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.8610    0.7476   -0.6058 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8543    2.4581    3.7121 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5912    3.5693    2.5589 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2802    2.6868    3.4298 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0574    3.6336    1.2252 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.7055    1.1041    1.7343 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1758    0.6288    5.1143 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3411   -0.5537    5.5673 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7777   -1.8664    3.7388 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.4575   -1.6991   -0.6060 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.5361    5.3845   -0.9867 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.8427    5.7701   -3.6064 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.5447    3.9988   -4.7721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1414    5.3515   -5.2007 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8310    3.8579   -3.3280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2940    1.9555   -3.9748 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4495    0.6503   -1.5269 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2521   -0.4920   -1.6369 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1716   -0.3792   -1.9151 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1334   -1.2080   -0.6707 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0260   -2.3486   -2.5500 H   0  0  0  0  0  0  0  0  0  0  0  0
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 56104  1  0
M  END


  Mrv1652309112213182D          

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 15 30  1  0  0  0  0
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 32 31  1  1  0  0  0
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 35 36  1  0  0  0  0
 34 37  1  0  0  0  0
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 39 40  1  1  0  0  0
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 32 41  1  0  0  0  0
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 30 43  1  0  0  0  0
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 43 44  1  6  0  0  0
 45 44  1  1  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
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 48 50  1  0  0  0  0
 50 51  1  1  0  0  0
 50 52  1  0  0  0  0
 45 52  1  0  0  0  0
 52 53  1  6  0  0  0
  6 54  1  0  0  0  0
 54 55  2  0  0  0  0
  3 55  1  0  0  0  0
 55 56  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0313625

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C(CCO[C@@H]2O[C@H](CO)[C@@H](OC(=O)\C=C\C3=CC=C(O)C(OC)=C3)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@H]2O[C@H]2OC[C@@H](O)[C@@H](O)[C@@H]2O)C=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C36H48O20/c1-48-21-7-4-17(11-19(21)40)9-10-50-36-33(56-34-29(46)26(43)20(41)15-51-34)32(55-35-30(47)28(45)27(44)23(13-37)52-35)31(24(14-38)53-36)54-25(42)8-5-16-3-6-18(39)22(12-16)49-2/h3-8,11-12,20,23-24,26-41,43-47H,9-10,13-15H2,1-2H3/b8-5+/t20-,23-,24-,26-,27-,28+,29+,30-,31-,32+,33-,34-,35+,36-/m1/s1

> <INCHI_KEY>
YWRJHQARRGBUJB-LJHYTHBCSA-N

> <FORMULA>
C36H48O20

> <MOLECULAR_WEIGHT>
800.76

> <EXACT_MASS>
800.273893946

> <JCHEM_ACCEPTOR_COUNT>
19

> <JCHEM_ATOM_COUNT>
104

> <JCHEM_AVERAGE_POLARIZABILITY>
78.81611305440907

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
10

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R,3R,4S,5R,6R)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2R,3S,4R,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate

> <JCHEM_LOGP>
-1.0761971979999987

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.233919843341464

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.62614801406283

> <JCHEM_PKA_STRONGEST_BASIC>
-3.526580682623445

> <JCHEM_POLAR_SURFACE_AREA>
302.44

> <JCHEM_REFRACTIVITY>
185.3622000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R,4S,5R,6R)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2R,3S,4R,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0      -4.001   6.930   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -5.335   6.160   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -5.335   4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.668   3.850   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.668   2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.335   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -5.335  -0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -6.668  -0.770   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -6.668  -2.310   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      -8.002  -3.080   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -9.336  -2.310   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0     -10.669  -3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -12.003  -2.310   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0     -12.003  -0.770   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0     -10.669  -4.620   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0     -12.003  -5.390   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0     -13.337  -4.620   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0     -13.337  -3.080   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0     -14.670  -5.390   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0     -16.004  -4.620   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0     -17.338  -5.390   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0     -17.338  -6.930   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     -18.672  -7.700   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0     -20.005  -6.930   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0     -21.339  -7.700   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0     -20.005  -5.390   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0     -21.339  -4.620   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0     -21.339  -3.080   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0     -18.672  -4.620   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -9.336  -5.390   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -9.336  -6.930   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0     -10.669  -7.700   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0     -12.003  -6.930   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0     -13.337  -7.700   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0     -14.670  -6.930   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0     -16.004  -7.700   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0     -13.337  -9.240   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0     -14.670 -10.010   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0     -12.003 -10.010   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0     -12.003 -11.550   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0     -10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      -9.336 -10.010   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      -6.668  -5.390   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      -5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      -5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0      -4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0      -1.334  -2.310   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      -1.334  -5.390   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      -4.001  -6.930   0.000  0.00  0.00           O+0
HETATM   54  C   UNK     0      -4.001   2.310   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      -4.001   3.850   0.000  0.00  0.00           C+0
HETATM   56  O   UNK     0      -2.667   4.620   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   55                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   54                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   43                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16   30                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   29                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   29                                                  
CONECT   27   26   28                                                       
CONECT   28   27                                                            
CONECT   29   26   21                                                       
CONECT   30   15   31   43                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33   41                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35   37                                                  
CONECT   35   34   36                                                       
CONECT   36   35                                                            
CONECT   37   34   38   39                                                  
CONECT   38   37                                                            
CONECT   39   37   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   32   42                                                  
CONECT   42   41                                                            
CONECT   43   30   10   44                                                  
CONECT   44   43   45                                                       
CONECT   45   44   46   52                                                  
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49   50                                                  
CONECT   49   48                                                            
CONECT   50   48   51   52                                                  
CONECT   51   50                                                            
CONECT   52   50   45   53                                                  
CONECT   53   52                                                            
CONECT   54    6   55                                                       
CONECT   55   54    3   56                                                  
CONECT   56   55                                                            
MASTER        0    0    0    0    0    0    0    0   56    0  120    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₆H₄₈O₂₀

Average Mass

800.7600 Da

Monoisotopic Mass

800.27389 Da

IUPAC Name

(2R,3R,4S,5R,6R)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2R,3S,4R,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate

Traditional Name

CAS Registry Number

Not Available

SMILES

COC1=CC=C(CCO[C@@H]2O[C@H](CO)[C@@H](OC(=O)\C=C\C3=CC=C(O)C(OC)=C3)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)[C@H]2O[C@H]2OC[C@@H](O)[C@@H](O)[C@@H]2O)C=C1O

InChI Identifier

InChI=1S/C36H48O20/c1-48-21-7-4-17(11-19(21)40)9-10-50-36-33(56-34-29(46)26(43)20(41)15-51-34)32(55-35-30(47)28(45)27(44)23(13-37)52-35)31(24(14-38)53-36)54-25(42)8-5-16-3-6-18(39)22(12-16)49-2/h3-8,11-12,20,23-24,26-41,43-47H,9-10,13-15H2,1-2H3/b8-5+/t20-,23-,24-,26-,27-,28+,29+,30-,31-,32+,33-,34-,35+,36-/m1/s1

InChI Key

YWRJHQARRGBUJB-LJHYTHBCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Veronica thomsonii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Oligosaccharides

Alternative Parents

Substituents

Oligosaccharide
Cinnamic acid or derivatives
Coumaric acid or derivatives
Hydroxycinnamic acid or derivatives
Cinnamic acid ester
Glycosyl compound
O-glycosyl compound
Methoxyphenol
Tyrosol derivative
Anisole
Phenoxy compound
Methoxybenzene
Phenol ether
Styrene
1-hydroxy-4-unsubstituted benzenoid
Fatty acid ester
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Phenol
Benzenoid
Fatty acyl
Monocyclic benzene moiety
Oxane
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Secondary alcohol
Organoheterocyclic compound
Ether
Acetal
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Oxacycle
Polyol
Alcohol
Carbonyl group
Hydrocarbon derivative
Primary alcohol
Organic oxide
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.1	ChemAxon
pKa (Strongest Acidic)	9.63	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	19	ChemAxon
Hydrogen Donor Count	10	ChemAxon
Polar Surface Area	302.44 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	185.36 m³·mol⁻¹	ChemAxon
Polarizability	78.82 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101500006

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate (NP0313625)

MOL for NP0313625 ((2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate)

3D MOL for NP0313625 ((2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate)

3D SDF for NP0313625 ((2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate)

3D-SDF for NP0313625 ((2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate)

PDB for NP0313625 ((2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate)

3D PDB for NP0313625 ((2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate)

SMILES for NP0313625 ((2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate)

INCHI for NP0313625 ((2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate)

Structure for NP0313625 ((2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate)

3D Structure for NP0313625 ((2r,3r,4s,5r,6r)-6-[2-(3-hydroxy-4-methoxyphenyl)ethoxy]-2-(hydroxymethyl)-4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-{[(2r,3s,4r,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-3-yl (2e)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate)