NP-MRD: Showing NP-Card for (2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one (NP0313373)

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Record Information

Version

2.0

Created at

2022-09-11 10:52:35 UTC

Updated at

2022-09-11 10:52:35 UTC

NP-MRD ID

NP0313373

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one

Description

Rabdoserrin A belongs to the class of organic compounds known as kaurane diterpenoids. These are diterpene alkaloids with a structure that is based on the kaurane skeleton. Kaurane is a tetracyclic compound that arises by cyclisation of a pimarane precursor followed by rearrangement. It possesses a [3,2,1]-bicyclic ring system with C15-C16 bridge connected to C13, forming the five-membered ring D. (2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one is found in Isodon inflexus and Isodon serra. (2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one was first documented in 1985 (PMID: 3841254). Based on a literature review very few articles have been published on Rabdoserrin A.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112212522D          

 25 30  0  0  1  0            999 V2000
    8.1905    0.0598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3821    0.2242    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8027   -0.4022    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0173   -1.1988    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9661   -0.1452    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3254    0.4725    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6080    1.2917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4199    1.5679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0917    1.0312    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4414    0.5293    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.8455    1.0999    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.1303    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9460    0.7990    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3734    1.5046    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1116    0.9834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5858    0.3192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0244   -0.4060    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2214   -0.5953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9561   -1.2493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7670   -1.4907    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3531   -0.8546    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9598   -1.4739    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5508   -0.8849    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8143   -0.4581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8844   -0.3412    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9  2  1  6  0  0  0
  9 10  1  0  0  0  0
  5 10  1  0  0  0  0
 10 11  1  6  0  0  0
  6 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 20  1  1  0  0  0
 12 21  1  0  0  0  0
 21 22  1  0  0  0  0
 23 22  1  6  0  0  0
  5 23  1  0  0  0  0
 23 24  1  0  0  0  0
 25 24  1  6  0  0  0
 12 25  1  0  0  0  0
 17 25  1  0  0  0  0
M  END

     RDKit          2D

 51 56  0  0  0  0  0  0  0  0999 V2000
   -2.0421    5.0936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8853    3.6018    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5862    2.8518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7841    3.4619    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7500    1.2990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7500    1.2990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0000    2.5981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5000    2.5981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7605    4.0753    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7500   -1.2990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2500   -1.2990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9895    0.1782    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0000   -2.5981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2500   -3.8971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7500   -3.8971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5000   -5.1962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7500   -3.8971    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5000   -2.5981    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7500   -1.2990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7500    1.2990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5000   -1.0981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5000   -2.5981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8285    5.9752    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4124    5.7037    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7722   -0.7947    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4637   -1.4265    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4616   -0.3374    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8991    0.3349    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8991    2.2632    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7500    3.8971    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2565    3.4369    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6114    5.0395    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7418   -1.1423    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7460    1.0170    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1491   -1.6339    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1491   -3.5623    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7116   -4.2345    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3547   -5.3935    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2500   -6.4952    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3021   -6.0989    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9816   -4.9616    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6715   -5.3951    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1595   -4.4101    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2500   -1.2990    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5000    2.5981    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9979   -1.1765    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0130    0.3115    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9554   -2.2351    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
 17 18  1  1
 17 16  1  0
 16 15  1  0
 15 13  1  0
 13 14  1  0
 13 12  1  0
 12 21  1  0
 21 20  1  0
 20 19  1  0
 21 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 23  5  1  0
  5 10  1  0
 10 11  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  9  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  2  0
 19 17  1  0
  6  5  1  0
 25 17  1  0
  5  3  1  1
 25 12  1  0
  6 12  1  0
 18 42  1  0
 18 43  1  0
 18 44  1  0
 16 40  1  0
 16 41  1  0
 15 38  1  0
 15 39  1  0
 13 36  1  1
 14 37  1  0
 21 47  1  6
 19 45  1  0
 19 46  1  0
 23 48  1  1
 24 49  1  0
 24 50  1  0
 25 51  1  6
 10 34  1  6
 11 35  1  0
  9 33  1  1
  8 31  1  0
  8 32  1  0
  7 29  1  0
  7 30  1  0
  6 28  1  0
  1 26  1  0
  1 27  1  0
M  END


  Mrv1652309112212522D          

 25 30  0  0  1  0            999 V2000
    8.1905    0.0598    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3821    0.2242    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8027   -0.4022    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0173   -1.1988    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9661   -0.1452    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.3254    0.4725    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6080    1.2917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4199    1.5679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0917    1.0312    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4414    0.5293    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.8455    1.0999    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.1303    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9460    0.7990    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3734    1.5046    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1116    0.9834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5858    0.3192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0244   -0.4060    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2214   -0.5953    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9561   -1.2493    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7670   -1.4907    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3531   -0.8546    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9598   -1.4739    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5508   -0.8849    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8143   -0.4581    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8844   -0.3412    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  5  3  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9  2  1  6  0  0  0
  9 10  1  0  0  0  0
  5 10  1  0  0  0  0
 10 11  1  6  0  0  0
  6 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 21 20  1  1  0  0  0
 12 21  1  0  0  0  0
 21 22  1  0  0  0  0
 23 22  1  6  0  0  0
  5 23  1  0  0  0  0
 23 24  1  0  0  0  0
 25 24  1  6  0  0  0
 12 25  1  0  0  0  0
 17 25  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0313373

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@]12CC[C@H](O)C34[C@H](OC1)O[C@H](C[C@H]23)[C@@]12[C@H](O)[C@H](CCC41)C(=C)C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H26O5/c1-9-10-3-4-11-19-12-7-14(20(11,15(9)22)16(10)23)25-17(19)24-8-18(12,2)6-5-13(19)21/h10-14,16-17,21,23H,1,3-8H2,2H3/t10-,11?,12-,13+,14-,16-,17-,18+,19?,20+/m1/s1

> <INCHI_KEY>
MOBGVVQDJSDAER-MLIMXJGBSA-N

> <FORMULA>
C20H26O5

> <MOLECULAR_WEIGHT>
346.423

> <EXACT_MASS>
346.178023937

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
82.99660304930242

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,5R,8R,10R,11S,14R,18R,20R)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1^{11,14}.0^{1,8}.0^{5,18}.0^{11,17}]icosan-12-one

> <JCHEM_LOGP>
1.2439505866666671

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.673613398470327

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.982342170287076

> <JCHEM_PKA_STRONGEST_BASIC>
-3.005302356689577

> <JCHEM_POLAR_SURFACE_AREA>
75.99000000000001

> <JCHEM_REFRACTIVITY>
88.41999999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,5R,8R,10R,11S,14R,18R,20R)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1^{11,14}.0^{1,8}.0^{5,18}.0^{11,17}]icosan-12-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0      15.289   0.112   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      13.780   0.418   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      12.698  -0.751   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      13.099  -2.238   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      11.137  -0.271   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.941   0.882   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      10.468   2.411   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.984   2.927   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      13.238   1.925   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.024   0.988   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      10.912   2.053   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       8.415   0.243   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.366   1.492   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       8.164   2.809   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       5.808   1.836   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.827   0.596   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.646  -0.758   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.147  -1.111   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.518  -2.332   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       7.032  -2.783   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       8.126  -1.595   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       9.258  -2.751   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      10.361  -1.652   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       8.987  -0.855   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.251  -0.637   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    9                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   10   23                                             
CONECT    6    5    7   12                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8    2   10                                                  
CONECT   10    9    5   11                                                  
CONECT   11   10                                                            
CONECT   12    6   13   21   25                                             
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19   25                                             
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   12   22                                                  
CONECT   22   21   23                                                       
CONECT   23   22    5   24                                                  
CONECT   24   23   25                                                       
CONECT   25   24   12   17                                                  
MASTER        0    0    0    0    0    0    0    0   25    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₆O₅

Average Mass

346.4230 Da

Monoisotopic Mass

346.17802 Da

IUPAC Name

(2S,5R,8R,10R,11S,14R,18R,20R)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1^{11,14}.0^{1,8}.0^{5,18}.0^{11,17}]icosan-12-one

Traditional Name

(2S,5R,8R,10R,11S,14R,18R,20R)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1^{11,14}.0^{1,8}.0^{5,18}.0^{11,17}]icosan-12-one

CAS Registry Number

Not Available

SMILES

C[C@]12CC[C@H](O)C34[C@H](OC1)O[C@H](C[C@H]23)[C@@]12[C@H](O)[C@H](CCC41)C(=C)C2=O

InChI Identifier

InChI=1S/C20H26O5/c1-9-10-3-4-11-19-12-7-14(20(11,15(9)22)16(10)23)25-17(19)24-8-18(12,2)6-5-13(19)21/h10-14,16-17,21,23H,1,3-8H2,2H3/t10-,11?,12-,13+,14-,16-,17-,18+,19?,20+/m1/s1

InChI Key

MOBGVVQDJSDAER-MLIMXJGBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Isodon inflexus	LOTUS Database	35616633
Isodon serra	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as kaurane diterpenoids. These are diterpene alkaloids with a structure that is based on the kaurane skeleton. Kaurane is a tetracyclic compound that arises by cyclisation of a pimarane precursor followed by rearrangement. It possesses a [3,2,1]-bicyclic ring system with C15-C16 bridge connected to C13, forming the five-membered ring D.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Kaurane diterpenoids

Alternative Parents

Substituents

Kaurane diterpenoid
Naphthopyran
Naphthalene
Pyran
Oxane
Cyclic alcohol
Secondary alcohol
Ketone
Oxacycle
Organoheterocyclic compound
Acetal
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.24	ChemAxon
pKa (Strongest Acidic)	13.98	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	75.99 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	88.42 m³·mol⁻¹	ChemAxon
Polarizability	83 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

114545138

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

137706282

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Jin RL, Cheng PY, Xu GY: [The structure of rabdoserrin A, isolated from Rabdosia serra (Maxim) Hara]. Yao Xue Xue Bao. 1985 May;20(5):366-71. [PubMed:3841254 ]
LOTUS database [Link]

Showing NP-Card for (2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one (NP0313373)

MOL for NP0313373 ((2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one)

3D MOL for NP0313373 ((2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one)

3D SDF for NP0313373 ((2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one)

3D-SDF for NP0313373 ((2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one)

PDB for NP0313373 ((2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one)

3D PDB for NP0313373 ((2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one)

SMILES for NP0313373 ((2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one)

INCHI for NP0313373 ((2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one)

Structure for NP0313373 ((2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one)

3D Structure for NP0313373 ((2s,5r,8r,10r,11s,14r,18r,20r)-2,20-dihydroxy-5-methyl-13-methylidene-7,9-dioxahexacyclo[8.7.2.1¹¹,¹⁴.0¹,⁸.0⁵,¹⁸.0¹¹,¹⁷]icosan-12-one)