NP-MRD: Showing NP-Card for (2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one (NP0313138)

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Record Information

Version

2.0

Created at

2022-09-11 10:28:50 UTC

Updated at

2022-09-11 10:28:50 UTC

NP-MRD ID

NP0313138

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one

Description

(2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one is found in Ustilaginoidea virens.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112212282D          

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M  END

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M  END


  Mrv1652309112212282D          

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 35 36  1  0  0  0  0
 35 37  1  0  0  0  0
 10 37  1  0  0  0  0
 37 38  2  0  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
  8 40  2  0  0  0  0
  2 40  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0313138

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@@H]1CC(=O)C2=C(O1)C=C1C(C(O)=CC(O)=C1C1=C3C=C4OC(CO)=CC(=O)C4=C(O)C3=C(O)C=C1O)=C2O

> <INCHI_IDENTIFIER>
InChI=1S/C28H20O12/c29-7-9-1-13(31)25-19(39-9)3-11-21(15(33)5-17(35)23(11)27(25)37)22-12-4-20-26(14(32)2-10(8-30)40-20)28(38)24(12)18(36)6-16(22)34/h1,3-6,10,29-30,33-38H,2,7-8H2/t10-/m0/s1

> <INCHI_KEY>
XAQKWUMPMIIFON-JTQLQIEISA-N

> <FORMULA>
C28H20O12

> <MOLECULAR_WEIGHT>
548.456

> <EXACT_MASS>
548.095476084

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
60

> <JCHEM_AVERAGE_POLARIZABILITY>
53.68128294671635

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxo-4H-benzo[g]chromen-9-yl]-2H,3H,4H-naphtho[2,3-b]pyran-4-one

> <JCHEM_LOGP>
2.637413318

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
7.710925913839828

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.73323174653317

> <JCHEM_PKA_STRONGEST_BASIC>
-5.526113742887721

> <JCHEM_POLAR_SURFACE_AREA>
214.43999999999997

> <JCHEM_REFRACTIVITY>
139.54169999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2H,3H-naphtho[2,3-b]pyran-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  O   UNK     0      10.669  -9.240   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      10.669  -7.700   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.336  -6.930   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.336  -5.390   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.002  -4.620   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       6.668  -5.390   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0      10.669  -4.620   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      12.003  -5.390   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      13.337  -4.620   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      14.670  -5.390   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      16.004  -4.620   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      16.004  -3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.670  -2.310   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      13.337  -3.080   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      14.670  -0.770   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      16.004   0.000   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      16.004   1.540   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      17.338  -0.770   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      18.672   0.000   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      18.672   1.540   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      20.005  -0.770   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      21.339   0.000   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      21.339   1.540   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      22.673  -0.770   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      22.673  -2.310   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      24.006  -3.080   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      25.340  -2.310   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      21.339  -3.080   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      20.005  -2.310   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      18.672  -3.080   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      17.338  -2.310   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      17.338  -5.390   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      18.672  -4.620   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      17.338  -6.930   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      16.004  -7.700   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      16.004  -9.240   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      14.670  -6.930   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      13.337  -7.700   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      13.337  -9.240   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      12.003  -6.930   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   40                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    7                                                  
CONECT    5    4    6                                                       
CONECT    6    5                                                            
CONECT    7    4    8                                                       
CONECT    8    7    9   40                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   37                                                  
CONECT   11   10   12   32                                                  
CONECT   12   11   13   31                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   31                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   29                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26   28                                                  
CONECT   26   25   27                                                       
CONECT   27   26                                                            
CONECT   28   25   29                                                       
CONECT   29   28   21   30                                                  
CONECT   30   29   31                                                       
CONECT   31   30   12   18                                                  
CONECT   32   11   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35                                                       
CONECT   35   34   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   10   38                                                  
CONECT   38   37   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38    8    2                                                  
MASTER        0    0    0    0    0    0    0    0   40    0   90    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₂₀O₁₂

Average Mass

548.4560 Da

Monoisotopic Mass

548.09548 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

OC[C@@H]1CC(=O)C2=C(O1)C=C1C(C(O)=CC(O)=C1C1=C3C=C4OC(CO)=CC(=O)C4=C(O)C3=C(O)C=C1O)=C2O

InChI Identifier

InChI=1S/C28H20O12/c29-7-9-1-13(31)25-19(39-9)3-11-21(15(33)5-17(35)23(11)27(25)37)22-12-4-20-26(14(32)2-10(8-30)40-20)28(38)24(12)18(36)6-16(22)34/h1,3-6,10,29-30,33-38H,2,7-8H2/t10-/m0/s1

InChI Key

XAQKWUMPMIIFON-JTQLQIEISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ustilaginoidea virens	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one (NP0313138)

MOL for NP0313138 ((2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one)

3D MOL for NP0313138 ((2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one)

3D SDF for NP0313138 ((2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one)

3D-SDF for NP0313138 ((2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one)

PDB for NP0313138 ((2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one)

3D PDB for NP0313138 ((2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one)

SMILES for NP0313138 ((2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one)

INCHI for NP0313138 ((2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one)

Structure for NP0313138 ((2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one)

3D Structure for NP0313138 ((2s)-5,6,8-trihydroxy-2-(hydroxymethyl)-9-[5,6,8-trihydroxy-2-(hydroxymethyl)-4-oxobenzo[g]chromen-9-yl]-2h,3h-naphtho[2,3-b]pyran-4-one)