NP-MRD: Showing NP-Card for (1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate (NP0313059)

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Record Information

Version

2.0

Created at

2022-09-11 10:20:45 UTC

Updated at

2022-09-11 10:20:45 UTC

NP-MRD ID

NP0313059

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate

Description

(1R,2'R,3S,4''R,5R,6S)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]Heptane-6,4':2',2''-Bis(oxolane)]-3-yl (3S)-3-hydroxy-2,2-dimethylbutanoate belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring. (1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate is found in Podospora decipiens. Based on a literature review very few articles have been published on (1R,2'R,3S,4''R,5R,6S)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]Heptane-6,4':2',2''-Bis(oxolane)]-3-yl (3S)-3-hydroxy-2,2-dimethylbutanoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112212202D          

 27 30  0  0  1  0            999 V2000
    0.3517   -1.1497    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5377   -0.3460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0654    0.2170    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8545   -0.0238    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0405   -0.8275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4374   -1.3905    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8296   -1.0683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5888   -1.8574    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0704   -0.2793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6186   -1.3091    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8047   -2.1129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2217   -0.7462    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1206    1.0208    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9097    1.2615    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1725    0.6263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3267   -0.1052    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5128    0.6986    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7818    1.4785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6066    1.4636    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8474    0.6746    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5235    1.1474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1821    0.6506    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9712    0.8914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9131   -0.1293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3859   -0.8054    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0882   -0.1145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1714    0.2017    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  6  0  0  0
  3 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 16 15  1  1  0  0  0
  2 16  1  0  0  0  0
 16 17  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  1  6  0  0  0
 18 19  1  0  0  0  0
 20 19  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 20 26  1  0  0  0  0
 20 27  1  0  0  0  0
 17 27  1  0  0  0  0
M  END

     RDKit          3D

 57 60  0  0  0  0  0  0  0  0999 V2000
   -0.1622   -2.1190   -0.8723 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0902   -0.9572   -0.2339 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9992    0.1728   -0.5860 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2442   -0.0895    0.0337 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3958   -0.3145   -0.6712 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3705   -0.2922   -1.9212 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6470   -0.5802    0.1072 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3539   -1.7730    0.9944 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8772    0.6699    0.9549 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8234   -0.8079   -0.8011 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.0220    0.4278   -1.6283 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9368   -1.0278   -0.0004 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4644    1.4959   -0.1036 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6121    1.3465    0.9199 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1972    0.2044    1.8594 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8870   -0.7244    0.8507 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.7319    0.4631    0.4577 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1241    0.5559   -0.9758 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3151   -0.1425   -1.0289 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0032    0.0781    0.1393 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1491    1.0258   -0.1121 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3294    0.0778   -0.1856 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.6201    0.7680    0.1953 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9438   -0.9484    0.8317 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7195   -1.5159    1.6449 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5749   -1.1150    0.6658 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0353    0.5964    1.1657 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5023   -2.9295   -0.6073 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9055   -2.2316   -1.6660 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1498    0.1574   -1.6998 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2692   -2.2396    1.3557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7025   -1.3874    1.8275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7166   -2.5224    0.4665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3563    0.5251    1.9078 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9478    0.9078    1.0585 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4127    1.5692    0.4597 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6346   -1.7021   -1.4147 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3850    1.2793   -1.3142 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8449    0.2289   -2.7082 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0751    0.7823   -1.5161 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2011   -1.9632    0.0595 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2992    2.0731    0.3195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1158    2.0537   -1.0111 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8677    2.2574    1.4481 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7219    0.2166    2.8201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8797    0.0360    1.9273 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3938   -1.5821    1.2750 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3903    0.1127   -1.6783 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3460    1.6307   -1.2180 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3219    1.6809    0.7651 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0437    1.5769   -1.0563 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3962   -0.4472   -1.1531 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3945    1.8364    0.3455 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0267    0.3614    1.1442 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3246    0.6076   -0.6474 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0359   -0.0129    2.0994 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2742    1.6496    1.3675 H   0  0  0  0  0  0  0  0  0  0  0  0
 11 10  1  0
 10 12  1  0
 10  7  1  0
  7  8  1  0
  7  9  1  0
  7  5  1  0
  5  6  2  0
  5  4  1  0
  4  3  1  0
  3 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16  2  1  0
  2  1  2  3
 16 17  1  0
 17 18  1  6
 18 19  1  0
 20 19  1  6
 20 21  1  0
 21 22  1  0
 22 23  1  0
 22 24  1  0
 24 25  2  0
 24 26  1  0
 20 27  1  0
  2  3  1  0
 27 17  1  0
 17 14  1  0
 26 20  1  0
 11 38  1  0
 11 39  1  0
 11 40  1  0
 10 37  1  6
 12 41  1  0
  8 31  1  0
  8 32  1  0
  8 33  1  0
  9 34  1  0
  9 35  1  0
  9 36  1  0
  3 30  1  6
 13 42  1  0
 13 43  1  0
 14 44  1  1
 15 45  1  0
 15 46  1  0
 16 47  1  1
  1 28  1  0
  1 29  1  0
 18 48  1  0
 18 49  1  0
 21 50  1  0
 21 51  1  0
 22 52  1  6
 23 53  1  0
 23 54  1  0
 23 55  1  0
 27 56  1  0
 27 57  1  0
M  END


  Mrv1652309112212202D          

 27 30  0  0  1  0            999 V2000
    0.3517   -1.1497    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5377   -0.3460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0654    0.2170    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8545   -0.0238    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0405   -0.8275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4374   -1.3905    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8296   -1.0683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5888   -1.8574    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0704   -0.2793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6186   -1.3091    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8047   -2.1129    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2217   -0.7462    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1206    1.0208    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9097    1.2615    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1725    0.6263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3267   -0.1052    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5128    0.6986    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7818    1.4785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6066    1.4636    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8474    0.6746    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5235    1.1474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1821    0.6506    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9712    0.8914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9131   -0.1293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3859   -0.8054    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0882   -0.1145    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1714    0.2017    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  7 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  6  0  0  0
  3 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 16 15  1  1  0  0  0
  2 16  1  0  0  0  0
 16 17  1  0  0  0  0
 14 17  1  0  0  0  0
 17 18  1  6  0  0  0
 18 19  1  0  0  0  0
 20 19  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 20 26  1  0  0  0  0
 20 27  1  0  0  0  0
 17 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0313059

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](O)C(C)(C)C(=O)O[C@H]1C[C@H]2C[C@@H](C1=C)[C@@]21CO[C@@]2(C[C@@H](C)C(=O)O2)C1

> <INCHI_IDENTIFIER>
InChI=1S/C21H30O6/c1-11-8-21(27-17(11)23)9-20(10-25-21)14-6-15(20)12(2)16(7-14)26-18(24)19(4,5)13(3)22/h11,13-16,22H,2,6-10H2,1,3-5H3/t11-,13+,14-,15+,16+,20+,21-/m1/s1

> <INCHI_KEY>
ZRQVIGLTTXPLCI-JPTINNESSA-N

> <FORMULA>
C21H30O6

> <MOLECULAR_WEIGHT>
378.465

> <EXACT_MASS>
378.204238686

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
57

> <JCHEM_AVERAGE_POLARIZABILITY>
40.907725262705355

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2'R,3S,4''R,5R,6S)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3S)-3-hydroxy-2,2-dimethylbutanoate

> <JCHEM_LOGP>
2.517866968333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.739284467538148

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9128369738988136

> <JCHEM_POLAR_SURFACE_AREA>
82.06000000000002

> <JCHEM_REFRACTIVITY>
96.98659999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2'R,3S,4''R,5R,6S)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3S)-3-hydroxy-2,2-dimethylbutanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0       0.656  -2.146   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.004  -0.646   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.122   0.405   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -1.595  -0.044   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -1.942  -1.545   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -0.817  -2.596   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -3.415  -1.994   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.966  -3.467   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.865  -0.521   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.888  -2.444   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -5.235  -3.944   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -6.014  -1.393   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       0.225   1.905   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.698   2.355   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.189   1.169   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.477  -0.196   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.824   1.304   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.326   2.760   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.866   2.732   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       5.315   1.259   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.577   2.142   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.807   1.214   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.280   1.664   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       7.304  -0.241   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       8.187  -1.503   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       5.765  -0.214   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       4.053   0.377   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   16                                                  
CONECT    3    2    4   13                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13    3   14                                                       
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15    2   17                                                  
CONECT   17   16   14   18   27                                             
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   26   27                                             
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   20                                                       
CONECT   27   20   17                                                       
MASTER        0    0    0    0    0    0    0    0   27    0   60    0
END

View in JSmol

Synonyms

Value	Source
(1R,2'r,3S,4''R,5R,6S)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3S)-3-hydroxy-2,2-dimethylbutanoic acid	Generator

Chemical Formula

C₂₁H₃₀O₆

Average Mass

378.4650 Da

Monoisotopic Mass

378.20424 Da

IUPAC Name

(1R,2'R,3S,4''R,5R,6S)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3S)-3-hydroxy-2,2-dimethylbutanoate

Traditional Name

(1R,2'R,3S,4''R,5R,6S)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3S)-3-hydroxy-2,2-dimethylbutanoate

CAS Registry Number

Not Available

SMILES

C[C@H](O)C(C)(C)C(=O)O[C@H]1C[C@H]2C[C@@H](C1=C)[C@@]21CO[C@@]2(C[C@@H](C)C(=O)O2)C1

InChI Identifier

InChI=1S/C21H30O6/c1-11-8-21(27-17(11)23)9-20(10-25-21)14-6-15(20)12(2)16(7-14)26-18(24)19(4,5)13(3)22/h11,13-16,22H,2,6-10H2,1,3-5H3/t11-,13+,14-,15+,16+,20+,21-/m1/s1

InChI Key

ZRQVIGLTTXPLCI-JPTINNESSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Podospora decipiens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Terpene lactones

Alternative Parents

Substituents

Terpene lactone
Bicyclic monoterpenoid
Pinane monoterpenoid
Monoterpenoid
Nopinane monoterpenoid
Beta-hydroxy acid
Ketal
Fatty acid ester
Dicarboxylic acid or derivatives
Fatty acyl
Gamma butyrolactone
Hydroxy acid
Tetrahydrofuran
Carboxylic acid ester
Secondary alcohol
Lactone
Organoheterocyclic compound
Oxacycle
Acetal
Carboxylic acid derivative
Carbonyl group
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Alcohol
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.52	ChemAxon
pKa (Strongest Acidic)	14.74	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	82.06 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	96.99 m³·mol⁻¹	ChemAxon
Polarizability	40.91 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162942431

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate (NP0313059)

MOL for NP0313059 ((1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate)

3D MOL for NP0313059 ((1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate)

3D SDF for NP0313059 ((1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate)

3D-SDF for NP0313059 ((1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate)

PDB for NP0313059 ((1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate)

3D PDB for NP0313059 ((1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate)

SMILES for NP0313059 ((1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate)

INCHI for NP0313059 ((1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate)

Structure for NP0313059 ((1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate)

3D Structure for NP0313059 ((1r,2'r,3s,4''r,5r,6s)-4''-methyl-2-methylidene-5''-oxodispiro[bicyclo[3.1.1]heptane-6,4':2',2''-bis(oxolane)]-3-yl (3s)-3-hydroxy-2,2-dimethylbutanoate)