NP-MRD: Showing NP-Card for (-)-pronuciferine (NP0312913)

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Record Information

Version

2.0

Created at

2022-09-11 10:06:20 UTC

Updated at

2022-09-11 10:06:21 UTC

NP-MRD ID

NP0312913

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-pronuciferine

Description

(-)-Pronuciferine belongs to the class of organic compounds known as proaporphines. These are benzylisoquinoline derivatives characterized by the presence of a spirocyclohexane ring that can occur in various oxidation levels, from cyclohexadienone to cyclohexanol. (-)-pronuciferine is found in Annona cherimola and Croton bonplandianus. Based on a literature review very few articles have been published on (-)-Pronuciferine.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 44 47  0  0  0  0  0  0  0  0999 V2000
    4.6532   -1.5704    0.4827 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8058   -0.4606    0.3661 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4459   -0.6016    0.1518 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8601   -1.8721    0.0424 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5114   -2.0000   -0.1702 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2117   -0.8282   -0.2670 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2847    0.4389   -0.1710 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6536    0.5327    0.0442 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1965    1.8110    0.1469 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2739    2.3952    1.4162 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8372    1.4367   -0.3272 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7455    2.4730    0.7150 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7673    3.7669    0.4686 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8882    4.2098   -0.9048 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9104    5.4626   -1.1560 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9824    3.2516   -1.9755 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9569    1.9478   -1.6870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0321    0.5434    0.0689 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6541   -0.7989   -0.5048 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2606   -1.9352    0.0092 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6882   -2.0200   -0.1159 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5885   -3.1299    0.2534 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2060   -3.3210   -0.2899 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8320   -2.0438   -0.5139 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1841   -2.3072    1.1703 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6329   -1.2472    0.9051 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4802   -2.7459    0.1270 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9724    3.4505    1.3403 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6739    1.8616    2.1923 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3491    2.3399    1.7221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6570    2.1529    1.7357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6976    4.5091    1.2610 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0714    3.5893   -2.9871 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0280    1.2515   -2.4964 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0680    0.4502    1.1738 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9663    0.9499   -0.3308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8066   -0.7670   -1.6193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1311   -1.1482    0.3898 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9467   -1.9964   -1.2012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0336   -2.9757    0.2934 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2033   -3.9665   -0.2018 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6356   -3.3734    1.3576 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3297   -4.0088    0.4017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1652   -3.7065   -1.3154 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6 19  1  0
 19 18  1  0
 18 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 14 16  1  0
 16 17  2  0
 11  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 19 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
  8  3  1  0
 23  5  1  0
  7  6  1  0
 17 11  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  4 27  1  0
 19 37  1  6
 18 35  1  0
 18 36  1  0
 12 31  1  0
 13 32  1  0
 16 33  1  0
 17 34  1  0
 10 28  1  0
 10 29  1  0
 10 30  1  0
 21 38  1  0
 21 39  1  0
 21 40  1  0
 22 41  1  0
 22 42  1  0
 23 43  1  0
 23 44  1  0
M  END


  Mrv1652309112212062D          

 23 26  0  0  1  0            999 V2000
    2.1488    3.0170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7665    2.4701    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6017    1.6617    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8192    1.4003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6544    0.5919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2721    0.0450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0545    0.3064    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2193    1.1148    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0018    1.3763    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1666    2.1847    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5450   -0.3569    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9515    0.3610    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7765    0.3678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1950   -0.3432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0199   -0.3363    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7884   -1.0611    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9634   -1.0679    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0657   -1.0284    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2789   -0.7800    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5679   -1.1984    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5748   -2.0234    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8501   -0.7919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8432    0.0331    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  7 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 11 17  1  0  0  0  0
 11 18  1  0  0  0  0
 19 18  1  6  0  0  0
  6 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
  5 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0312913

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC2=C3[C@H](CC4(C=CC(=O)C=C4)C3=C1OC)N(C)CC2

> <INCHI_IDENTIFIER>
InChI=1S/C19H21NO3/c1-20-9-6-12-10-15(22-2)18(23-3)17-16(12)14(20)11-19(17)7-4-13(21)5-8-19/h4-5,7-8,10,14H,6,9,11H2,1-3H3/t14-/m0/s1

> <INCHI_KEY>
WUYQEGNOQLRQAQ-AWEZNQCLSA-N

> <FORMULA>
C19H21NO3

> <MOLECULAR_WEIGHT>
311.381

> <EXACT_MASS>
311.15214354

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
33.98875416296569

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(4'S)-10',11'-dimethoxy-5'-methyl-5'-azaspiro[cyclohexane-1,2'-tricyclo[6.3.1.0^{4,12}]dodecane]-1'(11'),2,5,8'(12'),9'-pentaen-4-one

> <JCHEM_LOGP>
2.4568883619999995

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
7.691031191836952

> <JCHEM_POLAR_SURFACE_AREA>
38.77

> <JCHEM_REFRACTIVITY>
92.26999999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(4'S)-10',11'-dimethoxy-5'-methyl-5'-azaspiro[cyclohexane-1,2'-tricyclo[6.3.1.0^{4,12}]dodecane]-1'(11'),2,5,8'(12'),9'-pentaen-4-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0       4.011   5.632   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       5.164   4.611   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       4.856   3.102   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.396   2.614   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.088   1.105   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.241   0.084   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.702   0.572   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.009   2.081   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       7.470   2.569   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       7.778   4.078   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.617  -0.666   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.376   0.674   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       8.916   0.687   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.697  -0.641   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      11.237  -0.628   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       8.938  -1.981   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.398  -1.993   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.723  -1.920   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.254  -1.456   0.000  0.00  0.00           C+0
HETATM   20  N   UNK     0       2.927  -2.237   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0       2.940  -3.777   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.587  -1.478   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.574   0.062   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   23                                                  
CONECT    6    5    7   19                                                  
CONECT    7    6    8   11                                                  
CONECT    8    7    3    9                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    7   12   17   18                                             
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   11                                                       
CONECT   18   11   19                                                       
CONECT   19   18    6   20                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22    5                                                       
MASTER        0    0    0    0    0    0    0    0   23    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₁NO₃

Average Mass

311.3810 Da

Monoisotopic Mass

311.15214 Da

IUPAC Name

(4'S)-10',11'-dimethoxy-5'-methyl-5'-azaspiro[cyclohexane-1,2'-tricyclo[6.3.1.0^{4,12}]dodecane]-1'(11'),2,5,8'(12'),9'-pentaen-4-one

Traditional Name

(4'S)-10',11'-dimethoxy-5'-methyl-5'-azaspiro[cyclohexane-1,2'-tricyclo[6.3.1.0^{4,12}]dodecane]-1'(11'),2,5,8'(12'),9'-pentaen-4-one

CAS Registry Number

Not Available

SMILES

COC1=CC2=C3[C@H](CC4(C=CC(=O)C=C4)C3=C1OC)N(C)CC2

InChI Identifier

InChI=1S/C19H21NO3/c1-20-9-6-12-10-15(22-2)18(23-3)17-16(12)14(20)11-19(17)7-4-13(21)5-8-19/h4-5,7-8,10,14H,6,9,11H2,1-3H3/t14-/m0/s1

InChI Key

WUYQEGNOQLRQAQ-AWEZNQCLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Annona cherimola	LOTUS Database	35616633
Croton bonplandianus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as proaporphines. These are benzylisoquinoline derivatives characterized by the presence of a spirocyclohexane ring that can occur in various oxidation levels, from cyclohexadienone to cyclohexanol.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Proaporphines

Sub Class

Not Available

Direct Parent

Proaporphines

Alternative Parents

Substituents

Proaporphine
Tetrahydroisoquinoline
Indane
Anisole
Alkyl aryl ether
Aralkylamine
Benzenoid
Ketone
Tertiary amine
Cyclic ketone
Tertiary aliphatic amine
Ether
Azacycle
Organoheterocyclic compound
Organooxygen compound
Organonitrogen compound
Amine
Hydrocarbon derivative
Organopnictogen compound
Carbonyl group
Organic nitrogen compound
Organic oxide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.46	ChemAxon
pKa (Strongest Basic)	7.69	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	38.77 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	92.27 m³·mol⁻¹	ChemAxon
Polarizability	33.99 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

694299

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

793841

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (-)-pronuciferine (NP0312913)

MOL for NP0312913 ((-)-pronuciferine)

3D MOL for NP0312913 ((-)-pronuciferine)

3D SDF for NP0312913 ((-)-pronuciferine)

3D-SDF for NP0312913 ((-)-pronuciferine)

PDB for NP0312913 ((-)-pronuciferine)

3D PDB for NP0312913 ((-)-pronuciferine)

SMILES for NP0312913 ((-)-pronuciferine)

INCHI for NP0312913 ((-)-pronuciferine)

Structure for NP0312913 ((-)-pronuciferine)

3D Structure for NP0312913 ((-)-pronuciferine)