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Record Information
Version2.0
Created at2022-09-11 09:15:23 UTC
Updated at2022-09-11 09:15:23 UTC
NP-MRD IDNP0312455
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2e,4e,6e)-n-[(1s)-2-{[(2s)-1-[(3r,4s)-5-hydroxy-4-methyl-2-oxo-3,4-dihydropyrrol-3-yl]-3-methyl-1-oxobutan-2-yl]-c-hydroxycarbonimidoyl}-1-phenylethyl]octa-2,4,6-trienimidic acid
DescriptionAndrimid belongs to the class of organic compounds known as beta amino acids and derivatives. These are amino acids having a (-NH2) group attached to the beta carbon atom. (2e,4e,6e)-n-[(1s)-2-{[(2s)-1-[(3r,4s)-5-hydroxy-4-methyl-2-oxo-3,4-dihydropyrrol-3-yl]-3-methyl-1-oxobutan-2-yl]-c-hydroxycarbonimidoyl}-1-phenylethyl]octa-2,4,6-trienimidic acid is found in Pseudomonas fluorescens. (2e,4e,6e)-n-[(1s)-2-{[(2s)-1-[(3r,4s)-5-hydroxy-4-methyl-2-oxo-3,4-dihydropyrrol-3-yl]-3-methyl-1-oxobutan-2-yl]-c-hydroxycarbonimidoyl}-1-phenylethyl]octa-2,4,6-trienimidic acid was first documented in 2018 (PMID: 30500953). Based on a literature review a small amount of articles have been published on Andrimid (PMID: 33983855) (PMID: 33693627) (PMID: 33535752) (PMID: 33424823).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC27H33N3O5
Average Mass479.5770 Da
Monoisotopic Mass479.24202 Da
IUPAC Name(2E,4E,6E)-N-[(1S)-2-{[(2S)-1-[(3R,4S)-5-hydroxy-4-methyl-2-oxo-3,4-dihydro-2H-pyrrol-3-yl]-3-methyl-1-oxobutan-2-yl]-C-hydroxycarbonimidoyl}-1-phenylethyl]octa-2,4,6-trienimidic acid
Traditional Name(2E,4E,6E)-N-[(1S)-2-{[(2S)-1-[(3R,4S)-5-hydroxy-4-methyl-2-oxo-3,4-dihydropyrrol-3-yl]-3-methyl-1-oxobutan-2-yl]-C-hydroxycarbonimidoyl}-1-phenylethyl]octa-2,4,6-trienimidic acid
CAS Registry NumberNot Available
SMILES
C\C=C\C=C\C=C\C(O)=N[C@@H](CC(O)=N[C@@H](C(C)C)C(=O)[C@H]1[C@H](C)C(O)=NC1=O)C1=CC=CC=C1
InChI Identifier
InChI=1S/C27H33N3O5/c1-5-6-7-8-12-15-21(31)28-20(19-13-10-9-11-14-19)16-22(32)29-24(17(2)3)25(33)23-18(4)26(34)30-27(23)35/h5-15,17-18,20,23-24H,16H2,1-4H3,(H,28,31)(H,29,32)(H,30,34,35)/b6-5+,8-7+,15-12+/t18-,20-,23+,24-/m0/s1
InChI KeyOHDXGZAYYBMHCY-QSUIEZAASA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Pseudomonas fluorescensLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as beta amino acids and derivatives. These are amino acids having a (-NH2) group attached to the beta carbon atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentBeta amino acids and derivatives
Alternative Parents
Substituents
  • Beta amino acid or derivatives
  • Monocyclic benzene moiety
  • Fatty amide
  • N-acyl-amine
  • Pyrrolidone
  • 2-pyrrolidone
  • 1,3-dicarbonyl compound
  • Benzenoid
  • Fatty acyl
  • Carboxylic acid imide
  • Dicarboximide
  • Pyrrolidine
  • Carboxylic acid imide, n-unsubstituted
  • Secondary carboxylic acid amide
  • Carboxamide group
  • Ketone
  • Lactam
  • Azacycle
  • Organoheterocyclic compound
  • Organooxygen compound
  • Carbonyl group
  • Organopnictogen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organonitrogen compound
  • Organic nitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.58ChemAxon
pKa (Strongest Acidic)4.24ChemAxon
pKa (Strongest Basic)3.59ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area131.91 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity137.1 m³·mol⁻¹ChemAxon
Polarizability51.71 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID552562
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkAndrimid
METLIN IDNot Available
PubChem Compound636857
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Toor HG, Banerjee DI, Chauhan JB: In Silico Evaluation of Human Cathelicidin LL-37 as a Novel Therapeutic Inhibitor of Panton-Valentine Leukocidin Toxin of Methicillin-Resistant Staphylococcus aureus. Microb Drug Resist. 2021 May;27(5):602-615. doi: 10.1089/mdr.2020.0196. Epub 2020 Oct 13. [PubMed:33983855 ]
  2. Buijs Y, Zhang SD, Jorgensen KM, Isbrandt T, Larsen TO, Gram L: Enhancement of antibiotic production by co-cultivation of two antibiotic producing marine Vibrionaceae strains. FEMS Microbiol Ecol. 2021 Mar 31;97(4):fiab041. doi: 10.1093/femsec/fiab041. [PubMed:33693627 ]
  3. Messiha HL, Payne KAP, Scrutton NS, Leys D: A Biological Route to Conjugated Alkenes: Microbial Production of Hepta-1,3,5-triene. ACS Synth Biol. 2021 Feb 19;10(2):228-235. doi: 10.1021/acssynbio.0c00464. Epub 2021 Feb 3. [PubMed:33535752 ]
  4. Buijs Y, Isbrandt T, Zhang SD, Larsen TO, Gram L: The Antibiotic Andrimid Produced by Vibrio coralliilyticus Increases Expression of Biosynthetic Gene Clusters and Antibiotic Production in Photobacterium galatheae. Front Microbiol. 2020 Dec 22;11:622055. doi: 10.3389/fmicb.2020.622055. eCollection 2020. [PubMed:33424823 ]
  5. Matilla MA, Daddaoua A, Chini A, Morel B, Krell T: An auxin controls bacterial antibiotics production. Nucleic Acids Res. 2018 Nov 30;46(21):11229-11238. doi: 10.1093/nar/gky766. [PubMed:30500953 ]
  6. LOTUS database [Link]