NP-MRD: Showing NP-Card for (2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate (NP0312265)

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Record Information

Version

2.0

Created at

2022-09-11 08:54:49 UTC

Updated at

2022-09-11 08:54:50 UTC

NP-MRD ID

NP0312265

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate

Description

(2S,3R,4S,5S,6R)-2-{[(1R,2E,4S,7E)-1,7-dimethyl-4-(propan-2-yl)cyclodeca-2,7-dien-1-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl acetate belongs to the class of organic compounds known as germacrane sesquiterpenoids. These are sesquiterpenoids having the germacrane skeleton, with a structure characterized by a cyclodecane ring substituted with an isopropyl and two methyl groups. (2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate is found in Pittosporum viridiflorum. Based on a literature review very few articles have been published on (2S,3R,4S,5S,6R)-2-{[(1R,2E,4S,7E)-1,7-dimethyl-4-(propan-2-yl)cyclodeca-2,7-dien-1-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112210542D          

 30 31  0  0  1  0            999 V2000
    3.5842    2.1295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5842    1.3045    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8697    0.8920    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2986    0.8920    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2986    0.0670    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.0131   -0.3455    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7276    0.0670    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4421   -0.3455    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.7242    0.4298    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2545   -0.4887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7848    0.1433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5973   -0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.1276    0.6320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8454    1.4072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9401    0.4887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8795   -0.7752    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3492   -1.4072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5367   -1.2640    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8527   -0.8026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0064   -1.8960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1939   -1.7527    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9118   -0.9775    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0131   -1.1705    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2986   -1.5830    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2986   -2.4080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5842   -2.8205    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5842   -1.1705    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8697   -1.5830    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5842   -0.3455    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8697    0.0670    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  8  7  1  1  0  0  0
  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 12 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 18 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
  8 22  1  0  0  0  0
  6 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  6  0  0  0
 25 26  1  0  0  0  0
 24 27  1  0  0  0  0
 27 28  1  1  0  0  0
 27 29  1  0  0  0  0
  5 29  1  0  0  0  0
 29 30  1  6  0  0  0
M  END

     RDKit          3D

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    3.7277    0.7729   -0.1955 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3185    2.1632   -0.5447 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0439    2.7950   -1.7131 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3883    2.8349    0.0938 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6121    2.2951    1.2598 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4235    1.4806    0.7864 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0025   -0.6079    1.7620 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1207    0.2090    1.7862 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.1270   -0.4541    2.7182 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4315   -1.7131    2.2123 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7457    0.4230    0.4374 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.5637    1.5708    0.5421 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7254    0.7226   -0.6275 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3267    0.5717   -1.8584 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0472   -1.7691   -3.8521 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.4466   -2.7831   -1.4658 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4322   -2.3578    0.3270 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0954   -3.2538   -2.1998 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2602   -1.9554   -2.7855 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8101   -3.6179   -2.5132 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2050    0.4003   -1.7188 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5830   -0.6930   -1.7097 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6671    0.5653    0.8914 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8092    0.6894   -0.4316 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1172    3.8881   -1.5970 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6064    2.4785   -2.6722 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0982    2.4049   -1.7136 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1721    3.8535   -0.2539 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2985    3.1646    1.8762 H   0  0  0  0  0  0  0  0  0  0  0  0
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    0.4778    1.2364   -0.2754 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1 33  1  0
 10 39  1  0
 11 40  1  0
M  END


  Mrv1652309112210542D          

 30 31  0  0  1  0            999 V2000
    3.5842    2.1295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5842    1.3045    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8697    0.8920    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2986    0.8920    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2986    0.0670    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.0131   -0.3455    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.7276    0.0670    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4421   -0.3455    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.7242    0.4298    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2545   -0.4887    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7848    0.1433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5973   -0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.1276    0.6320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.3492   -1.4072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5367   -1.2640    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8527   -0.8026    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0064   -1.8960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1939   -1.7527    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9118   -0.9775    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0131   -1.1705    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2986   -1.5830    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2986   -2.4080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5842   -2.8205    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5842   -1.1705    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8697   -1.5830    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5842   -0.3455    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8697    0.0670    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
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 27 29  1  0  0  0  0
  5 29  1  0  0  0  0
 29 30  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0312265

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)[C@@H]1CC\C(C)=C\CC[C@@](C)(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2OC(C)=O)\C=C\1

> <INCHI_IDENTIFIER>
InChI=1S/C23H38O7/c1-14(2)17-9-8-15(3)7-6-11-23(5,12-10-17)30-22-21(28-16(4)25)20(27)19(26)18(13-24)29-22/h7,10,12,14,17-22,24,26-27H,6,8-9,11,13H2,1-5H3/b12-10+,15-7+/t17-,18-,19-,20+,21-,22+,23-/m1/s1

> <INCHI_KEY>
FEPMKPCIGUXEGE-CFMXMGDUSA-N

> <FORMULA>
C23H38O7

> <MOLECULAR_WEIGHT>
426.55

> <EXACT_MASS>
426.261753564

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
46.76387485262239

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3R,4S,5S,6R)-2-{[(1R,2E,4S,7E)-1,7-dimethyl-4-(propan-2-yl)cyclodeca-2,7-dien-1-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl acetate

> <JCHEM_LOGP>
2.7038668319999997

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.017529006066521

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.695641934691682

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810844974053534

> <JCHEM_POLAR_SURFACE_AREA>
105.45000000000002

> <JCHEM_REFRACTIVITY>
113.94190000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1R,2E,4S,7E)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0       6.690   3.975   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.690   2.435   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       5.357   1.665   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       8.024   1.665   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       8.024   0.125   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.358  -0.645   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      10.691   0.125   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      12.025  -0.645   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.552   0.802   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.542  -0.912   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      14.532   0.267   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      16.048  -0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      17.038   1.180   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      16.511   2.627   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      18.555   0.912   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      16.575  -1.447   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      15.585  -2.627   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      14.068  -2.359   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.792  -1.498   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      13.079  -3.539   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      11.562  -3.272   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      11.035  -1.825   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       9.358  -2.185   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       8.024  -2.955   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.024  -4.495   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       6.690  -5.265   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       6.690  -2.185   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       5.357  -2.955   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       6.690  -0.645   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       5.357   0.125   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   29                                                  
CONECT    6    5    7   23                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10   22                                             
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   16                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   12   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21    8                                                       
CONECT   23    6   24                                                       
CONECT   24   23   25   27                                                  
CONECT   25   24   26                                                       
CONECT   26   25                                                            
CONECT   27   24   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27    5   30                                                  
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   62    0
END

View in JSmol

Synonyms

Value	Source
(2S,3R,4S,5S,6R)-2-{[(1R,2E,4S,7E)-1,7-dimethyl-4-(propan-2-yl)cyclodeca-2,7-dien-1-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl acetic acid	Generator

Chemical Formula

C₂₃H₃₈O₇

Average Mass

426.5500 Da

Monoisotopic Mass

426.26175 Da

IUPAC Name

(2S,3R,4S,5S,6R)-2-{[(1R,2E,4S,7E)-1,7-dimethyl-4-(propan-2-yl)cyclodeca-2,7-dien-1-yl]oxy}-4,5-dihydroxy-6-(hydroxymethyl)oxan-3-yl acetate

Traditional Name

(2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1R,2E,4S,7E)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate

CAS Registry Number

Not Available

SMILES

CC(C)[C@@H]1CC\C(C)=C\CC[C@@](C)(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2OC(C)=O)\C=C\1

InChI Identifier

InChI=1S/C23H38O7/c1-14(2)17-9-8-15(3)7-6-11-23(5,12-10-17)30-22-21(28-16(4)25)20(27)19(26)18(13-24)29-22/h7,10,12,14,17-22,24,26-27H,6,8-9,11,13H2,1-5H3/b12-10+,15-7+/t17-,18-,19-,20+,21-,22+,23-/m1/s1

InChI Key

FEPMKPCIGUXEGE-CFMXMGDUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pittosporum viridiflorum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacrane sesquiterpenoids. These are sesquiterpenoids having the germacrane skeleton, with a structure characterized by a cyclodecane ring substituted with an isopropyl and two methyl groups.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Germacrane sesquiterpenoids

Alternative Parents

Substituents

Germacrane sesquiterpenoid
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Monosaccharide
Oxane
Carboxylic acid ester
Secondary alcohol
Organoheterocyclic compound
Oxacycle
Monocarboxylic acid or derivatives
Acetal
Carboxylic acid derivative
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Alcohol
Primary alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.7	ChemAxon
pKa (Strongest Acidic)	12.7	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	105.45 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	113.94 m³·mol⁻¹	ChemAxon
Polarizability	46.76 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162882645

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate (NP0312265)

MOL for NP0312265 ((2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate)

3D MOL for NP0312265 ((2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate)

3D SDF for NP0312265 ((2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate)

3D-SDF for NP0312265 ((2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate)

PDB for NP0312265 ((2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate)

3D PDB for NP0312265 ((2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate)

SMILES for NP0312265 ((2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate)

INCHI for NP0312265 ((2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate)

Structure for NP0312265 ((2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate)

3D Structure for NP0312265 ((2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(1r,2e,4s,7e)-4-isopropyl-1,7-dimethylcyclodeca-2,7-dien-1-yl]oxy}oxan-3-yl acetate)