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Record Information
Version2.0
Created at2022-09-11 08:37:40 UTC
Updated at2022-09-11 08:37:40 UTC
NP-MRD IDNP0312115
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2r,3r,4r,5r)-1,2,5-trihydroxy-6-oxo-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}hexan-3-yl (2e)-3-(3,4-dihydroxyphenyl)prop-2-enoate
DescriptionCistanoside F belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. Fatty acyl glycosides of mono- and disaccharides are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol. (2r,3r,4r,5r)-1,2,5-trihydroxy-6-oxo-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}hexan-3-yl (2e)-3-(3,4-dihydroxyphenyl)prop-2-enoate is found in Acanthus ilicifolius, Buddleja officinalis, Cistanche deserticola, Cistanche salsa, Plantago depressa, Plantago lanceolata, Premna odorata, Rehmannia glutinosa, Scrophularia ningpoensis, Sesamum indicum and Stachys byzantina. (2r,3r,4r,5r)-1,2,5-trihydroxy-6-oxo-4-{[(2s,3r,4r,5r,6s)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}hexan-3-yl (2e)-3-(3,4-dihydroxyphenyl)prop-2-enoate was first documented in 2018 (PMID: 29584748). Based on a literature review a small amount of articles have been published on Cistanoside F (PMID: 35285206) (PMID: 35534249) (PMID: 33310479) (PMID: 32116723).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC21H28O13
Average Mass488.4420 Da
Monoisotopic Mass488.15299 Da
IUPAC Name(2R,3R,4R,5R)-1,2,5-trihydroxy-6-oxo-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}hexan-3-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate
Traditional Name(2R,3R,4R,5R)-1,2,5-trihydroxy-6-oxo-4-{[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxy}hexan-3-yl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate
CAS Registry NumberNot Available
SMILES
C[C@@H]1O[C@@H](O[C@H]([C@@H](O)C=O)[C@H](OC(=O)\C=C\C2=CC=C(O)C(O)=C2)[C@H](O)CO)[C@H](O)[C@H](O)[C@H]1O
InChI Identifier
InChI=1S/C21H28O13/c1-9-16(29)17(30)18(31)21(32-9)34-20(14(27)8-23)19(13(26)7-22)33-15(28)5-3-10-2-4-11(24)12(25)6-10/h2-6,8-9,13-14,16-22,24-27,29-31H,7H2,1H3/b5-3+/t9-,13+,14-,16-,17+,18+,19+,20+,21-/m0/s1
InChI KeyKARNWFDIYRKBOE-BHSPTIPFSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Acanthus ilicifoliusLOTUS Database
Buddleja officinalisLOTUS Database
Cistanche deserticolaLOTUS Database
Cistanche salsaLOTUS Database
Plantago depressaLOTUS Database
Plantago lanceolataLOTUS Database
Premna odorataLOTUS Database
Rehmannia glutinosaLOTUS Database
Scrophularia ningpoensisLOTUS Database
Sesamum indicumLOTUS Database
Stachys byzantinaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty acyl glycosides of mono- and disaccharides. Fatty acyl glycosides of mono- and disaccharides are compounds composed of a mono- or disaccharide moiety linked to one hydroxyl group of a fatty alcohol or of a phosphorylated alcohol (phosphoprenols), a hydroxy fatty acid or to one carboxyl group of a fatty acid (ester linkage) or to an amino alcohol.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acyl glycosides
Direct ParentFatty acyl glycosides of mono- and disaccharides
Alternative Parents
Substituents
  • Fatty acyl glycoside of mono- or disaccharide
  • Alkyl glycoside
  • Cinnamic acid or derivatives
  • Coumaric acid or derivatives
  • Hydroxycinnamic acid or derivatives
  • Cinnamic acid ester
  • Disaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Fatty alcohol
  • Catechol
  • Styrene
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Fatty acid ester
  • Phenol
  • Monocyclic benzene moiety
  • Benzenoid
  • Oxane
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Alpha-hydroxyaldehyde
  • Carboxylic acid ester
  • Secondary alcohol
  • Acetal
  • Polyol
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Oxacycle
  • Organoheterocyclic compound
  • Hydrocarbon derivative
  • Primary alcohol
  • Organic oxide
  • Organic oxygen compound
  • Aldehyde
  • Carbonyl group
  • Alcohol
  • Organooxygen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.9ChemAxon
pKa (Strongest Acidic)9.21ChemAxon
pKa (Strongest Basic)-3.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area223.67 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity111.74 m³·mol⁻¹ChemAxon
Polarizability45.29 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00035259
Chemspider ID57621542
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101688189
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Han DE, Yue ZS, Li HW, Liu GZ, Cai BR, Tian P: [Anti-depressant components and mechanism of Rehmanniae Radix based on UPLC-Q-Orbitrap HRMS and network pharmacology]. Zhongguo Zhong Yao Za Zhi. 2022 Feb;47(4):1051-1063. doi: 10.19540/j.cnki.cjcmm.20210811.404. [PubMed:35285206 ]
  2. Cao ZY, Liu JT, Han YQ, Zhang TJ, Xu J: [Identification of Q-markers for Cistanches Herba based on HPLC-Q-TOF-MS/MS and network pharmacology]. Zhongguo Zhong Yao Za Zhi. 2022 Apr;47(7):1790-1801. doi: 10.19540/j.cnki.cjcmm.20211210.201. [PubMed:35534249 ]
  3. Li T, Cao L, Tang H, Li J, Tu P, Song Q, Song Y: Liquid chromatography-three-dimensional mass spectrometry enables confirmative structural annotation of cistanoside F metabolites in rat. J Chromatogr B Analyt Technol Biomed Life Sci. 2021 Jan 1;1162:122457. doi: 10.1016/j.jchromb.2020.122457. Epub 2020 Nov 26. [PubMed:33310479 ]
  4. Gong X, Wang J, Zhang M, Wang P, Wang C, Shi R, Zang E, Zhang M, Zhang C, Li M: Bioactivity, Compounds Isolated, Chemical Qualitative, and Quantitative Analysis of Cymbaria daurica Extracts. Front Pharmacol. 2020 Feb 7;11:48. doi: 10.3389/fphar.2020.00048. eCollection 2020. [PubMed:32116723 ]
  5. Fuji Y, Uchida A, Fukahori K, Chino M, Ohtsuki T, Matsufuji H: Chemical characterization and biological activity in young sesame leaves (Sesamum indicum L.) and changes in iridoid and polyphenol content at different growth stages. PLoS One. 2018 Mar 27;13(3):e0194449. doi: 10.1371/journal.pone.0194449. eCollection 2018. [PubMed:29584748 ]
  6. LOTUS database [Link]