Np mrd loader

Record Information
Version2.0
Created at2022-09-11 08:21:50 UTC
Updated at2022-09-11 08:21:51 UTC
NP-MRD IDNP0311978
Secondary Accession NumbersNone
Natural Product Identification
Common Nameclionasterol
DescriptionClionasterol, also known as gamma-sitosterol or harzol, belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24. Thus, clionasterol is considered to be a sterol lipid molecule. clionasterol is found in Achillea santolina, Acorus calamus, Alitta succinea, Anaxagorea crassipetala, Artocarpus kemando, Aster ageratoides, Astragalus schahrudensis, Axinella aruensis, Axinella cannabina, Bistorta officinalis, Calyptocarpus vialis, Caulerpa prolifera, Cinachyrella alloclada, Cissus quadrangularis, Cladophora rupestris, Clerodendrum infortunatum, Cliona celata, Codium decorticatum, Coriaria intermedia, Croton skutchii, Dalbergia monetaria, Daucus carota, Diplopterygium glaucum, Dumortiera hirsuta, Euphorbia helioscopia, Euphorbia nivulia, Eutreptia viridis, Gracilaria edulis, Haplophyllum obtusifolium, Humboldtia laurifolia, Hydrodictyon reticulatum, Hydropuntia edulis, Juniperus formosana, Kalanchoe petitiana, Kalanchoe pinnata, Khaya senegalensis, Kigelia africana, Lamium amplexicaule, Leptogorgia violetta, Lessertia frutescens, Ligularia veitchiana, Littorina littorea, Melilotus messanensis, Neofibularia nolitangere, Oxalis pes-caprae, Paeonia suffruticosa, Pavlova gyrans, Petrosia durissima, Petrosia weinbergi, Phytolacca acinosa, Piper umbellatum, Pongamia pinnata, Catunaregam spinosa, Saussurea medusa, Senna siamea, Spheciospongia inconstans, Tanacetum argenteum, Tenebrio molitor, Tephrosia hamiltonii, Thalia multiflora, Trifolium repens and Vernonia incana. clionasterol was first documented in 2012 (PMID: 22863942). Clionasterol is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral (PMID: 24417147) (PMID: 24831420) (PMID: 26710827) (PMID: 27694009).
Structure
Thumb
Synonyms
ValueSource
(3beta,24S)-Stigmast-5-en-3-olChEBI
22,23-DihydroporiferasterolChEBI
24-Ethylcholest-5-en-3 beta-olChEBI
24beta-Ethyl-5-cholesten-3beta-olChEBI
24beta-EthylcholesterolChEBI
24S-Ethylcholest-5-en-3beta-olChEBI
beta-DihydrofucosterolChEBI
gamma-SitosterolChEBI
Poriferast-5-en-3beta-olChEBI
(3b,24S)-Stigmast-5-en-3-olGenerator
(3Β,24S)-stigmast-5-en-3-olGenerator
24-Ethylcholest-5-en-3 b-olGenerator
24-Ethylcholest-5-en-3 β-olGenerator
24b-Ethyl-5-cholesten-3b-olGenerator
24Β-ethyl-5-cholesten-3β-olGenerator
24b-EthylcholesterolGenerator
24Β-ethylcholesterolGenerator
24S-Ethylcholest-5-en-3b-olGenerator
24S-Ethylcholest-5-en-3β-olGenerator
b-DihydrofucosterolGenerator
Β-dihydrofucosterolGenerator
g-SitosterolGenerator
Γ-sitosterolGenerator
Poriferast-5-en-3b-olGenerator
Poriferast-5-en-3β-olGenerator
24b-Ethylcholest-5-en-3b-olHMDB
24-EthylcholesterolHMDB
3beta-Stigmast-5-en-3-olHMDB
SitosterolHMDB
Sitosterol, (3beta,24xi)-isomerHMDB
Sitosterol, 26-(14)C-labeledHMDB
3beta-SitosterolHMDB
HarzolHMDB
beta-SitosterolHMDB
Sitosterol, (3beta)-isomerHMDB
Chemical FormulaC29H50O
Average Mass414.7067 Da
Monoisotopic Mass414.38617 Da
IUPAC Name(1S,2R,5S,10S,11S,14R,15R)-14-[(2R,5S)-5-ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-ol
Traditional Name(1S,2R,5S,10S,11S,14R,15R)-14-[(2R,5S)-5-ethyl-6-methylheptan-2-yl]-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-7-en-5-ol
CAS Registry NumberNot Available
SMILES
[H][C@@]12CC[C@H]([C@H](C)CC[C@H](CC)C(C)C)[C@@]1(C)CC[C@@]1([H])[C@@]2([H])CC=C2C[C@@H](O)CC[C@]12C
InChI Identifier
InChI=1S/C29H50O/c1-7-21(19(2)3)9-8-20(4)25-12-13-26-24-11-10-22-18-23(30)14-16-28(22,5)27(24)15-17-29(25,26)6/h10,19-21,23-27,30H,7-9,11-18H2,1-6H3/t20-,21+,23+,24+,25-,26+,27+,28+,29-/m1/s1
InChI KeyKZJWDPNRJALLNS-FBZNIEFRSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Achillea santolinaLOTUS Database
Acorus calamusLOTUS Database
Alitta succineaLOTUS Database
Anaxagorea crassipetalaLOTUS Database
Artocarpus kemandoLOTUS Database
Aster ageratoidesLOTUS Database
Astragalus schahrudensisLOTUS Database
Axinella aruensisLOTUS Database
Axinella cannabinaLOTUS Database
Bistorta officinalisLOTUS Database
Calyptocarpus vialisLOTUS Database
Caulerpa proliferaLOTUS Database
Cinachyrella allocladaLOTUS Database
Cissus quadrangularisLOTUS Database
Cladophora rupestrisLOTUS Database
Clerodendrum infortunatumLOTUS Database
Cliona celataLOTUS Database
Codium decorticatumLOTUS Database
Coriaria intermediaLOTUS Database
Croton skutchiiLOTUS Database
Dalbergia monetariaLOTUS Database
Daucus carotaLOTUS Database
Diplopterygium glaucumLOTUS Database
Dumortiera hirsutaLOTUS Database
Euphorbia helioscopiaLOTUS Database
Euphorbia nivuliaLOTUS Database
Eutreptia viridisLOTUS Database
Gracilaria edulisLOTUS Database
Haplophyllum obtusifoliumLOTUS Database
Humboldtia laurifoliaLOTUS Database
Hydrodictyon reticulatumLOTUS Database
Hydropuntia edulisLOTUS Database
Juniperus formosanaLOTUS Database
Kalanchoe petitianaLOTUS Database
Kalanchoe pinnataLOTUS Database
Khaya senegalensisLOTUS Database
Kigelia africanaLOTUS Database
Lamium amplexicauleLOTUS Database
Leptogorgia violettaLOTUS Database
Lessertia frutescensLOTUS Database
Ligularia veitchianaLOTUS Database
Littorina littoreaLOTUS Database
Melilotus messanensisLOTUS Database
Neofibularia nolitangereLOTUS Database
Oxalis pes-capraeLOTUS Database
Paeonia suffruticosaLOTUS Database
Pavlova gyransLOTUS Database
Petrosia durissimaLOTUS Database
Petrosia weinbergiLOTUS Database
Phytolacca acinosaLOTUS Database
Piper umbellatumLOTUS Database
Pongamia pinnataLOTUS Database
Randia dumetorumLOTUS Database
Saussurea medusaLOTUS Database
Senna siameaLOTUS Database
Spheciospongia inconstansLOTUS Database
Tanacetum argenteumLOTUS Database
Tenebrio molitorLOTUS Database
Tephrosia hamiltoniiLOTUS Database
Thalia multifloraLOTUS Database
Trifolium repensLOTUS Database
Vernonia incanaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as stigmastanes and derivatives. These are sterol lipids with a structure based on the stigmastane skeleton, which consists of a cholestane moiety bearing an ethyl group at the carbon atom C24.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassStigmastanes and derivatives
Direct ParentStigmastanes and derivatives
Alternative Parents
Substituents
  • C24-propyl-sterol-skeleton
  • Stigmastane-skeleton
  • Triterpenoid
  • 3-hydroxy-delta-5-steroid
  • 3-hydroxysteroid
  • Hydroxysteroid
  • 3-beta-hydroxysteroid
  • 3-beta-hydroxy-delta-5-steroid
  • Delta-5-steroid
  • Cyclic alcohol
  • Secondary alcohol
  • Alcohol
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP7.27ALOGPS
logP7.84ChemAxon
logS-7.4ALOGPS
pKa (Strongest Acidic)18.2ChemAxon
pKa (Strongest Basic)-1.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity129.77 m³·mol⁻¹ChemAxon
Polarizability54.39 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
HMDB IDHMDB0000649
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDFDB012131
KNApSAcK IDC00023769
Chemspider ID402901
KEGG Compound IDC19654
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN ID5621
PubChem Compound457801
PDB IDNot Available
ChEBI ID132823
Good Scents IDNot Available
References
General References
  1. Le TK, Jeong JJ, Kim DH: Clionosterol and ethyl cholestan-22-enol isolated from the rhizome of Polygala tenuifolia inhibit phosphatidylinositol 3-kinase/Akt pathway. Biol Pharm Bull. 2012;35(8):1379-83. doi: 10.1248/bpb.b12-00426. [PubMed:22863942 ]
  2. Zhang Y, Feng TT, Zhao Z, Zhou Y: [Study on the chemical constituents of mori cortex]. Zhong Yao Cai. 2013 Jul;36(7):1101-3. [PubMed:24417147 ]
  3. Abou-Hussein DR, Badr JM, Youssef DT: Dragmacidoside: a new nucleoside from the Red Sea sponge Dragmacidon coccinea. Nat Prod Res. 2014;28(15):1134-41. doi: 10.1080/14786419.2014.915828. Epub 2014 May 15. [PubMed:24831420 ]
  4. Karunakaran T, Ee GC, Teh SS, Daud S, Mah SH, Lim CK, Jong VY, Awang K: A new coumarin from stem bark of Mesua hexapetala. Nat Prod Res. 2016 Jul;30(14):1591-7. doi: 10.1080/14786419.2015.1120727. Epub 2015 Dec 28. [PubMed:26710827 ]
  5. Nusaibah SA, Siti Nor Akmar A, Idris AS, Sariah M, Mohamad Pauzi Z: Involvement of metabolites in early defense mechanism of oil palm (Elaeis guineensis Jacq.) against Ganoderma disease. Plant Physiol Biochem. 2016 Dec;109:156-165. doi: 10.1016/j.plaphy.2016.09.014. Epub 2016 Sep 19. [PubMed:27694009 ]
  6. LOTUS database [Link]