NP-MRD: Showing NP-Card for 3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid (NP0311045)

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Record Information

Version

2.0

Created at

2022-09-11 06:46:24 UTC

Updated at

2022-09-11 06:46:25 UTC

NP-MRD ID

NP0311045

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid

Description

3-(Acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups. 3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid is found in Botrytis cinerea. 3-(Acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004261504162D          

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M  END

     RDKit          3D

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  Mrv1533004261504162D          

 33 33  0  0  0  0            999 V2000
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M  END
> <DATABASE_ID>
NP0311045

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCC(O)C=CC(=O)OC1C(C)OC(C)(C(OC(C)=O)C(C)C(O)=O)C(O)C1C

> <INCHI_IDENTIFIER>
InChI=1S/C24H40O9/c1-7-8-9-10-11-18(26)12-13-19(27)32-20-14(2)21(28)24(6,33-16(20)4)22(31-17(5)25)15(3)23(29)30/h12-16,18,20-22,26,28H,7-11H2,1-6H3,(H,29,30)

> <INCHI_KEY>
OEOZRSNZAPXESQ-UHFFFAOYSA-N

> <FORMULA>
C24H40O9

> <MOLECULAR_WEIGHT>
472.575

> <EXACT_MASS>
472.267232868

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
51.10428799085537

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid

> <ALOGPS_LOGP>
3.31

> <JCHEM_LOGP>
3.3113171286666665

> <ALOGPS_LOGS>
-3.75

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.60792844343861

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.050060124663926

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8715617686902073

> <JCHEM_POLAR_SURFACE_AREA>
139.59

> <JCHEM_REFRACTIVITY>
120.04419999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
14

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.35e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-APR-15         0                                  
HETATM    1  C   UNK     0      -8.002  -9.240   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -6.668  -8.470   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.335  -9.240   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.001  -8.470   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.667  -9.240   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334  -8.470   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000  -9.240   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       0.000 -10.780   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.334  -8.470   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667  -9.240   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667 -10.780   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.334 -11.550   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       4.001 -11.550   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       5.335 -10.780   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.001  -8.470   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       6.668  -8.470   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       8.002  -9.240   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.519  -9.507   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.529  -7.793   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      10.045  -7.525   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      11.035  -8.705   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      12.552  -8.438   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      10.509 -10.152   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.539  -6.613   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       8.066  -5.166   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.022  -6.881   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       5.496  -8.328   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0       5.032  -5.701   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       8.002 -10.780   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       9.336 -11.550   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       6.668 -11.550   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       6.668 -13.090   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15   32                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19   20   30                                             
CONECT   19   18                                                            
CONECT   20   18   21   25                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   20   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   18   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   14   33                                                  
CONECT   33   32                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   66    0
END

View in JSmol

Synonyms

Value	Source
3-(Acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoate	Generator

Chemical Formula

C₂₄H₄₀O₉

Average Mass

472.5750 Da

Monoisotopic Mass

472.26723 Da

IUPAC Name

3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid

Traditional Name

3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid

CAS Registry Number

Not Available

SMILES

CCCCCCC(O)C=CC(=O)OC1C(C)OC(C)(C(OC(C)=O)C(C)C(O)=O)C(O)C1C

InChI Identifier

InChI=1S/C24H40O9/c1-7-8-9-10-11-18(26)12-13-19(27)32-20-14(2)21(28)24(6,33-16(20)4)22(31-17(5)25)15(3)23(29)30/h12-16,18,20-22,26,28H,7-11H2,1-6H3,(H,29,30)

InChI Key

OEOZRSNZAPXESQ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Botrytis cinerea	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Tricarboxylic acids and derivatives

Direct Parent

Tricarboxylic acids and derivatives

Alternative Parents

Substituents

Fatty alcohol
Tricarboxylic acid or derivatives
Fatty acid ester
Oxane
Fatty acyl
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Secondary alcohol
Carboxylic acid
Dialkyl ether
Ether
Oxacycle
Organoheterocyclic compound
Carbonyl group
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organic oxygen compound
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.31	ALOGPS
logP	3.31	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	4.05	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	139.59 Å²	ChemAxon
Rotatable Bond Count	14	ChemAxon
Refractivity	120.04 m³·mol⁻¹	ChemAxon
Polarizability	51.1 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid (NP0311045)

MOL for NP0311045 (3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid)

3D MOL for NP0311045 (3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid)

3D SDF for NP0311045 (3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid)

3D-SDF for NP0311045 (3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid)

PDB for NP0311045 (3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid)

3D PDB for NP0311045 (3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid)

SMILES for NP0311045 (3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid)

INCHI for NP0311045 (3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid)

Structure for NP0311045 (3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid)

3D Structure for NP0311045 (3-(acetyloxy)-3-{3-hydroxy-5-[(4-hydroxydec-2-enoyl)oxy]-2,4,6-trimethyloxan-2-yl}-2-methylpropanoic acid)