NP-MRD: Showing NP-Card for 11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one (NP0310930)

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Record Information

Version

2.0

Created at

2022-09-11 06:34:56 UTC

Updated at

2022-09-11 06:34:56 UTC

NP-MRD ID

NP0310930

Secondary Accession Numbers

None

Natural Product Identification

Common Name

11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one

Description

11-Hydroxy-4-(1H-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-dodecahydro-1H-cyclohexa[e]naphthalen-1-one belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. 11-Hydroxy-4-(1H-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-dodecahydro-1H-cyclohexa[e]naphthalen-1-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004231518382D          

 31 35  0  0  0  0            999 V2000
    3.4930   -0.2404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8078    0.2190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0673   -0.1446    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3821    0.3148    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4374    1.1380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7460    0.6879    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5961    1.4446    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0136    0.8603    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2999    2.2495    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9925    2.7590    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5115    2.0993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9096    1.5350    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1779    1.5017    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8631    1.0422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6036    1.4059    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6590    2.2290    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.2332    2.3248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5480    2.7843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3995    2.5927    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4548    3.4158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0847    2.1332    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2889    0.9464    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3199    0.1220    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1135   -0.1033    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
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    5.0633    1.2307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
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M  END

     RDKit          3D

 68 72  0  0  0  0  0  0  0  0999 V2000
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    3.0236   -1.9742    1.7433 N   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1533004231518382D          

 31 35  0  0  0  0            999 V2000
    3.4930   -0.2404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
NP0310930

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1CCC2(C)C(C)CCC(O)C22C1C(C(CC2=O)C(C)=C)C1=CNC2=CC=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C28H37NO2/c1-16(2)20-14-24(31)28-23(30)11-10-18(4)27(28,5)13-12-17(3)26(28)25(20)21-15-29-22-9-7-6-8-19(21)22/h6-9,15,17-18,20,23,25-26,29-30H,1,10-14H2,2-5H3

> <INCHI_KEY>
CTCFXRNJXWQDJI-UHFFFAOYSA-N

> <FORMULA>
C28H37NO2

> <MOLECULAR_WEIGHT>
419.609

> <EXACT_MASS>
419.282429435

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
48.785006917857345

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
11-hydroxy-4-(1H-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-dodecahydro-1H-cyclohexa[e]naphthalen-1-one

> <ALOGPS_LOGP>
5.77

> <JCHEM_LOGP>
5.845876246666666

> <ALOGPS_LOGS>
-6.35

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
16.125841714209034

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.497310515936412

> <JCHEM_PKA_STRONGEST_BASIC>
-3.014027218529214

> <JCHEM_POLAR_SURFACE_AREA>
53.089999999999996

> <JCHEM_REFRACTIVITY>
125.51329999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.87e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
11-hydroxy-4-(1H-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2H-cyclohexa[e]naphthalen-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  C   UNK     0       6.520  -0.449   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.241   0.409   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.859  -0.270   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.580   0.588   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.683   2.124   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.393   1.284   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.113   2.697   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.025   1.606   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.560   4.199   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.853   5.150   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.821   3.919   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       1.698   2.865   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       4.065   2.803   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.344   1.945   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.727   2.624   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.830   4.161   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.551   5.018   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.169   4.340   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       2.890   5.197   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       8.212   4.840   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.316   6.376   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.491   3.982   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       8.006   1.767   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       8.064   0.228   0.000  0.00  0.00           C+0
HETATM   25  N   UNK     0       9.545  -0.193   0.000  0.00  0.00           N+0
HETATM   26  C   UNK     0      10.403   1.086   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      11.927   1.305   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      12.500   2.734   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      11.549   3.945   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      10.025   3.727   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       9.452   2.297   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   14                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7   13                                             
CONECT    6    5                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11    5   14   18                                             
CONECT   14   13    2   15                                                  
CONECT   15   14   16   23                                                  
CONECT   16   15   17   20                                                  
CONECT   17   16   18                                                       
CONECT   18   17   13   19                                                  
CONECT   19   18                                                            
CONECT   20   16   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20                                                            
CONECT   23   15   24   31                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   23   26                                                  
MASTER        0    0    0    0    0    0    0    0   31    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₇NO₂

Average Mass

419.6090 Da

Monoisotopic Mass

419.28243 Da

IUPAC Name

11-hydroxy-4-(1H-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-dodecahydro-1H-cyclohexa[e]naphthalen-1-one

Traditional Name

11-hydroxy-4-(1H-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2H-cyclohexa[e]naphthalen-1-one

CAS Registry Number

Not Available

SMILES

CC1CCC2(C)C(C)CCC(O)C22C1C(C(CC2=O)C(C)=C)C1=CNC2=CC=CC=C12

InChI Identifier

InChI=1S/C28H37NO2/c1-16(2)20-14-24(31)28-23(30)11-10-18(4)27(28,5)13-12-17(3)26(28)25(20)21-15-29-22-9-7-6-8-19(21)22/h6-9,15,17-18,20,23,25-26,29-30H,1,10-14H2,2-5H3

InChI Key

CTCFXRNJXWQDJI-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
3-alkylindole
Indole
Indole or derivatives
Benzenoid
Substituted pyrrole
Cyclic alcohol
Heteroaromatic compound
Pyrrole
Ketone
Secondary alcohol
Azacycle
Organoheterocyclic compound
Organopnictogen compound
Organic nitrogen compound
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Alcohol
Hydrocarbon derivative
Carbonyl group
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.77	ALOGPS
logP	5.85	ChemAxon
logS	-6.4	ALOGPS
pKa (Strongest Acidic)	14.5	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	53.09 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	125.51 m³·mol⁻¹	ChemAxon
Polarizability	48.79 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73825057

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one (NP0310930)

MOL for NP0310930 (11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one)

3D MOL for NP0310930 (11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one)

3D SDF for NP0310930 (11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one)

3D-SDF for NP0310930 (11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one)

PDB for NP0310930 (11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one)

3D PDB for NP0310930 (11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one)

SMILES for NP0310930 (11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one)

INCHI for NP0310930 (11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one)

Structure for NP0310930 (11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one)

3D Structure for NP0310930 (11-hydroxy-4-(1h-indol-3-yl)-5,7a,8-trimethyl-3-(prop-1-en-2-yl)-decahydro-2h-cyclohexa[e]naphthalen-1-one)