Np mrd loader

Record Information
Version2.0
Created at2022-09-11 05:53:11 UTC
Updated at2022-09-11 05:53:11 UTC
NP-MRD IDNP0310519
Secondary Accession NumbersNone
Natural Product Identification
Common Name[(2r,3s,4s,5r,6r)-3,4,5-trihydroxy-6-{[4-hydroxy-2,2,6,6-tetramethyl-4-(2-methylpropyl)-3,5-dioxocyclohexyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate
DescriptionGallomyrtucommulone B belongs to the class of organic compounds known as terpene glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically bound to a terpene backbone. [(2r,3s,4s,5r,6r)-3,4,5-trihydroxy-6-{[4-hydroxy-2,2,6,6-tetramethyl-4-(2-methylpropyl)-3,5-dioxocyclohexyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate is found in Myrtus communis. [(2r,3s,4s,5r,6r)-3,4,5-trihydroxy-6-{[4-hydroxy-2,2,6,6-tetramethyl-4-(2-methylpropyl)-3,5-dioxocyclohexyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate was first documented in 2006 (PMID: 16499325). Based on a literature review very few articles have been published on Gallomyrtucommulone B.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC27H38O13
Average Mass570.5880 Da
Monoisotopic Mass570.23124 Da
IUPAC Name[(2R,3S,4S,5R,6R)-3,4,5-trihydroxy-6-{[4-hydroxy-2,2,6,6-tetramethyl-4-(2-methylpropyl)-3,5-dioxocyclohexyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate
Traditional Name[(2R,3S,4S,5R,6R)-3,4,5-trihydroxy-6-{[4-hydroxy-2,2,6,6-tetramethyl-4-(2-methylpropyl)-3,5-dioxocyclohexyl]oxy}oxan-2-yl]methyl 3,4,5-trihydroxybenzoate
CAS Registry NumberNot Available
SMILES
CC(C)CC1(O)C(=O)C(C)(C)C(O[C@@H]2O[C@H](COC(=O)C3=CC(O)=C(O)C(O)=C3)[C@@H](O)[C@H](O)[C@H]2O)C(C)(C)C1=O
InChI Identifier
InChI=1S/C27H38O13/c1-11(2)9-27(37)22(35)25(3,4)24(26(5,6)23(27)36)40-21-19(33)18(32)17(31)15(39-21)10-38-20(34)12-7-13(28)16(30)14(29)8-12/h7-8,11,15,17-19,21,24,28-33,37H,9-10H2,1-6H3/t15-,17-,18+,19-,21+,24?,27?/m1/s1
InChI KeyVKHZSJBPCYWANI-XXZDZOCTSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Myrtus communisLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as terpene glycosides. These are prenol lipids containing a carbohydrate moiety glycosidically bound to a terpene backbone.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTerpene glycosides
Direct ParentTerpene glycosides
Alternative Parents
Substituents
  • Terpene glycoside
  • Galloyl ester
  • Gallic acid or derivatives
  • P-hydroxybenzoic acid alkyl ester
  • Glycosyl compound
  • O-glycosyl compound
  • M-hydroxybenzoic acid ester
  • P-hydroxybenzoic acid ester
  • Monocyclic monoterpenoid
  • Monoterpenoid
  • Aromatic monoterpenoid
  • Benzoate ester
  • Benzoic acid or derivatives
  • Benzenetriol
  • Pyrogallol derivative
  • Benzoyl
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Oxane
  • Benzenoid
  • Monosaccharide
  • Acyloin
  • Monocyclic benzene moiety
  • Tertiary alcohol
  • Cyclic alcohol
  • Cyclic ketone
  • Carboxylic acid ester
  • Ketone
  • Secondary alcohol
  • Oxacycle
  • Organoheterocyclic compound
  • Polyol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Acetal
  • Organic oxygen compound
  • Organooxygen compound
  • Alcohol
  • Organic oxide
  • Carbonyl group
  • Hydrocarbon derivative
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.73ChemAxon
pKa (Strongest Acidic)8.11ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count12ChemAxon
Hydrogen Donor Count7ChemAxon
Polar Surface Area220.51 ŲChemAxon
Rotatable Bond Count8ChemAxon
Refractivity136.36 m³·mol⁻¹ChemAxon
Polarizability55.78 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID9838912
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11664177
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Appendino G, Maxia L, Bettoni P, Locatelli M, Valdivia C, Ballero M, Stavri M, Gibbons S, Sterner O: Antibacterial galloylated alkylphloroglucinol glucosides from myrtle (Myrtus communis). J Nat Prod. 2006 Feb;69(2):251-4. doi: 10.1021/np050462w. [PubMed:16499325 ]
  2. LOTUS database [Link]