NP-MRD: Showing NP-Card for (1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one (NP0309894)

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Record Information

Version

2.0

Created at

2022-09-11 04:47:51 UTC

Updated at

2022-09-11 04:47:52 UTC

NP-MRD ID

NP0309894

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one

Description

(1S,4S,5R,6S,9S,10R,12R,14R)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]Pentadeca-2,7-dien-15-one belongs to the class of organic compounds known as tigliane and ingenane diterpenoids. These are diterpenoids containing the tigliane or ingenane carbon skeleton. The tigliane skeleton is a tetracyclic ring that consists of the 4/7/6/3 ring junction. It is derived from casbane by 6,10- and 5,14-cyclizations and is a framework of phorbol. The ingenane skeleton is derived by rearrangement of tigliane. Based on a literature review very few articles have been published on (1S,4S,5R,6S,9S,10R,12R,14R)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]Pentadeca-2,7-dien-15-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112206472D          

 35 38  0  0  1  0            999 V2000
    7.2119   -1.5517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   11.4987   -1.5517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309112206472D          

 35 38  0  0  1  0            999 V2000
    7.2119   -1.5517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   15.8406   -2.3477    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   15.1061   -2.7235    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.8346   -1.4852    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   15.1427   -1.9346    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.3449   -1.3130    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   18.3932   -0.4894    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   17.7644    0.0871    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.9387   -0.1186    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   16.4606    0.5538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.0823   -0.9430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7846   -0.5101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.7293   -1.4549    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 12 11  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  6  0  0  0
 17 18  2  0  0  0  0
 19 17  1  6  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 21 24  1  0  0  0  0
 24 25  1  6  0  0  0
 24 26  1  0  0  0  0
 12 26  1  0  0  0  0
 16 26  1  0  0  0  0
 26 27  1  6  0  0  0
 19 28  1  0  0  0  0
 28 29  1  1  0  0  0
 29 30  1  1  0  0  0
 30 31  1  0  0  0  0
 16 31  1  0  0  0  0
 31 32  1  6  0  0  0
 29 33  1  0  0  0  0
 28 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0309894

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCO[C@H]1C(C)=C[C@@]23[C@H](C)C[C@@H]4[C@H]([C@H](C=C(CO)[C@H](O)[C@@]12O)C3=O)C4(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C30H48O5/c1-6-7-8-9-10-11-12-13-14-35-27-19(2)17-29-20(3)15-23-24(28(23,4)5)22(26(29)33)16-21(18-31)25(32)30(27,29)34/h16-17,20,22-25,27,31-32,34H,6-15,18H2,1-5H3/t20-,22+,23-,24+,25+,27+,29+,30-/m1/s1

> <INCHI_KEY>
AXDIYVFJMQKUET-GUBBNLRRSA-N

> <FORMULA>
C30H48O5

> <MOLECULAR_WEIGHT>
488.709

> <EXACT_MASS>
488.350174646

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
83

> <JCHEM_AVERAGE_POLARIZABILITY>
59.23881464477273

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,4S,5R,6S,9S,10R,12R,14R)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0^{1,5}.0^{10,12}]pentadeca-2,7-dien-15-one

> <JCHEM_LOGP>
4.9271055346666675

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.501360804759912

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.119364104438974

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7637286542888093

> <JCHEM_POLAR_SURFACE_AREA>
86.99000000000001

> <JCHEM_REFRACTIVITY>
140.25769999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4S,5R,6S,9S,10R,12R,14R)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0^{1,5}.0^{10,12}]pentadeca-2,7-dien-15-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0      13.462  -2.896   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      14.796  -2.126   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      16.130  -2.896   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      17.463  -2.126   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      18.797  -2.896   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      20.131  -2.126   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      21.464  -2.896   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      22.798  -2.126   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      24.132  -2.896   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      25.465  -2.126   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      26.799  -2.896   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      28.133  -2.126   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      28.284  -0.591   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      27.143   0.444   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      29.799  -0.289   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      30.713  -1.607   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      31.832  -2.492   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      32.789  -1.285   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      32.986  -3.409   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      32.342  -4.849   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      30.842  -5.315   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      30.588  -6.834   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      29.146  -7.373   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      29.569  -4.382   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      28.198  -5.084   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      29.558  -2.772   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      28.266  -3.611   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      34.244  -2.451   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      34.334  -0.914   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      33.160   0.163   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      31.619  -0.221   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      30.727   1.034   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      35.620  -1.760   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      36.931  -0.952   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      36.828  -2.716   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   26                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17   26   31                                             
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   28                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   24                                                  
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24   21   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   12   16   27                                             
CONECT   27   26                                                            
CONECT   28   19   29   33                                                  
CONECT   29   28   30   33                                                  
CONECT   30   29   31                                                       
CONECT   31   30   16   32                                                  
CONECT   32   31                                                            
CONECT   33   29   28   34   35                                             
CONECT   34   33                                                            
CONECT   35   33                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₄₈O₅

Average Mass

488.7090 Da

Monoisotopic Mass

488.35017 Da

IUPAC Name

(1S,4S,5R,6S,9S,10R,12R,14R)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0^{1,5}.0^{10,12}]pentadeca-2,7-dien-15-one

Traditional Name

(1S,4S,5R,6S,9S,10R,12R,14R)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0^{1,5}.0^{10,12}]pentadeca-2,7-dien-15-one

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCO[C@H]1C(C)=C[C@@]23[C@H](C)C[C@@H]4[C@H]([C@H](C=C(CO)[C@H](O)[C@@]12O)C3=O)C4(C)C

InChI Identifier

InChI=1S/C30H48O5/c1-6-7-8-9-10-11-12-13-14-35-27-19(2)17-29-20(3)15-23-24(28(23,4)5)22(26(29)33)16-21(18-31)25(32)30(27,29)34/h16-17,20,22-25,27,31-32,34H,6-15,18H2,1-5H3/t20-,22+,23-,24+,25+,27+,29+,30-/m1/s1

InChI Key

AXDIYVFJMQKUET-GUBBNLRRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tigliane and ingenane diterpenoids. These are diterpenoids containing the tigliane or ingenane carbon skeleton. The tigliane skeleton is a tetracyclic ring that consists of the 4/7/6/3 ring junction. It is derived from casbane by 6,10- and 5,14-cyclizations and is a framework of phorbol. The ingenane skeleton is derived by rearrangement of tigliane.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Tigliane and ingenane diterpenoids

Alternative Parents

Substituents

Ingenane diterpenoid
Tertiary alcohol
Secondary alcohol
Ketone
Ether
Dialkyl ether
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.93	ChemAxon
pKa (Strongest Acidic)	12.12	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	86.99 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	140.26 m³·mol⁻¹	ChemAxon
Polarizability	59.24 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162953279

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one (NP0309894)

MOL for NP0309894 ((1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one)

3D MOL for NP0309894 ((1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one)

3D SDF for NP0309894 ((1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one)

3D-SDF for NP0309894 ((1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one)

PDB for NP0309894 ((1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one)

3D PDB for NP0309894 ((1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one)

SMILES for NP0309894 ((1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one)

INCHI for NP0309894 ((1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one)

Structure for NP0309894 ((1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one)

3D Structure for NP0309894 ((1s,4s,5r,6s,9s,10r,12r,14r)-4-(decyloxy)-5,6-dihydroxy-7-(hydroxymethyl)-3,11,11,14-tetramethyltetracyclo[7.5.1.0¹,⁵.0¹⁰,¹²]pentadeca-2,7-dien-15-one)