NP-MRD: Showing NP-Card for 6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione (NP0309485)

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Record Information

Version

2.0

Created at

2022-09-11 04:07:13 UTC

Updated at

2022-09-11 04:07:14 UTC

NP-MRD ID

NP0309485

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione

Description

6-Hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-tetrahydro-2H-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. 6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione is found in Viburnum wrightii. 6-Hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-tetrahydro-2H-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004231521432D          

 34 38  0  0  0  0            999 V2000
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    0.5111   -0.9973    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9198   -0.1144    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7273    0.0547    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9846    0.8385    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8574    1.0426    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3319    0.3624    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6491    1.0388    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5649    0.8741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6301    0.0517    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3197   -0.4718    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8681   -0.2645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4376   -0.9683    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6352   -0.7762    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6344   -1.6628    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5699    0.0462    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8080   -0.2700    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2717    0.3570    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3601   -0.1030    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7023    1.0607    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.1316    1.4048    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.4968    0.6511    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1533004231521432D          

 34 38  0  0  0  0            999 V2000
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M  END
> <DATABASE_ID>
NP0309485

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OCC1OC(OC23OCC(O)C2OC(=O)C32OC(=O)CC2C2=CC=C(O)C=C2)C(O)C(O)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C21H24O13/c22-6-12-14(26)15(27)16(28)18(31-12)34-21-17(11(24)7-30-21)32-19(29)20(21)10(5-13(25)33-20)8-1-3-9(23)4-2-8/h1-4,10-12,14-18,22-24,26-28H,5-7H2

> <INCHI_KEY>
LQPXLFOWOYAKCV-UHFFFAOYSA-N

> <FORMULA>
C21H24O13

> <MOLECULAR_WEIGHT>
484.41

> <EXACT_MASS>
484.121690833

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
43.92273793429008

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-tetrahydro-2H-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione

> <ALOGPS_LOGP>
-1.04

> <JCHEM_LOGP>
-1.6047915180000003

> <ALOGPS_LOGS>
-1.08

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.16645576507269

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.497721655888562

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810849158981325

> <JCHEM_POLAR_SURFACE_AREA>
201.67

> <JCHEM_REFRACTIVITY>
103.70830000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.98e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5H-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  O   UNK     0      -0.354  -2.836   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       0.954  -1.862   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.717  -0.214   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.224   0.102   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       3.705   1.565   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       5.334   1.946   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       6.220   0.677   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       6.812   1.939   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       8.521   1.632   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       8.643   0.096   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       9.930  -0.881   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       7.221  -0.494   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       6.417  -1.807   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.919  -1.449   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       4.918  -3.104   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       4.797   0.086   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.375  -0.504   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.374   0.666   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       0.672  -0.192   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       3.178   1.980   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.675   1.621   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.846   2.622   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.564   4.136   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.734   5.137   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.186   4.624   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       9.311   5.790   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       8.468   3.110   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.298   2.109   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.678   2.713   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       2.683   4.421   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       1.170   2.397   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -0.062   3.494   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       0.690   0.934   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -0.927   1.215   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   33                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   29                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   12   16                                             
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10    7   13                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    7   17   21                                             
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   16   22                                                  
CONECT   22   21   23   28                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   22                                                       
CONECT   29    5   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31    3   34                                                  
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₄O₁₃

Average Mass

484.4100 Da

Monoisotopic Mass

484.12169 Da

IUPAC Name

6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-tetrahydro-2H-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione

Traditional Name

6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5H-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione

CAS Registry Number

Not Available

SMILES

OCC1OC(OC23OCC(O)C2OC(=O)C32OC(=O)CC2C2=CC=C(O)C=C2)C(O)C(O)C1O

InChI Identifier

InChI=1S/C21H24O13/c22-6-12-14(26)15(27)16(28)18(31-12)34-21-17(11(24)7-30-21)32-19(29)20(21)10(5-13(25)33-20)8-1-3-9(23)4-2-8/h1-4,10-12,14-18,22-24,26-28H,5-7H2

InChI Key

LQPXLFOWOYAKCV-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Viburnum wrightii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glycosyl compounds

Alternative Parents

Substituents

Disaccharide
O-glycosyl compound
Isosorbide
Furofuran
1-hydroxy-2-unsubstituted benzenoid
Ketal
Phenol
Monocyclic benzene moiety
Dicarboxylic acid or derivatives
Benzenoid
Gamma butyrolactone
Oxane
Tetrahydrofuran
Lactone
Secondary alcohol
Carboxylic acid ester
Acetal
Organoheterocyclic compound
Oxacycle
Carboxylic acid derivative
Polyol
Primary alcohol
Hydrocarbon derivative
Carbonyl group
Organic oxide
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1	ALOGPS
logP	-1.6	ChemAxon
logS	-1.1	ALOGPS
pKa (Strongest Acidic)	9.5	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	201.67 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	103.71 m³·mol⁻¹	ChemAxon
Polarizability	43.92 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione (NP0309485)

MOL for NP0309485 (6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione)

3D MOL for NP0309485 (6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione)

3D SDF for NP0309485 (6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione)

3D-SDF for NP0309485 (6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione)

PDB for NP0309485 (6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione)

3D PDB for NP0309485 (6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione)

SMILES for NP0309485 (6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione)

INCHI for NP0309485 (6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione)

Structure for NP0309485 (6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione)

3D Structure for NP0309485 (6-hydroxy-3'-(4-hydroxyphenyl)-3a-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-dihydro-5h-spiro[furo[3,2-b]furan-3,2'-oxolane]-2,5'-dione)