NP-MRD: Showing NP-Card for (2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol (NP0308075)

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Record Information

Version

2.0

Created at

2022-09-11 01:37:35 UTC

Updated at

2022-09-11 01:37:35 UTC

NP-MRD ID

NP0308075

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol

Description

(2S,3R,4S,5R,6R)-3-{[(2S,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds. (2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol is found in Stellaria media. Based on a literature review very few articles have been published on (2S,3R,4S,5R,6R)-3-{[(2S,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112203372D          

 45 48  0  0  1  0            999 V2000
    1.3367   -7.4604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

 87 90  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652309112203372D          

 45 48  0  0  1  0            999 V2000
    1.3367   -7.4604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0011   -6.7067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4860   -6.0393    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2311   -5.2547    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8985   -4.7697    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3465   -4.1566    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5395   -4.3282    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0125   -3.7151    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2424   -2.9305    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0494   -2.7589    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3096   -2.3174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1166   -2.4889    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6686   -1.8758    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4756   -2.0473    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3715   -3.2735    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1785   -3.4450    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8195   -3.8866    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0744   -4.6712    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4506   -4.1566    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1956   -3.3720    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7477   -2.7589    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4927   -1.9743    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0447   -1.3612    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8517   -1.5327    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4038   -0.9196    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1488   -0.1350    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7008    0.4781    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.4459    1.2627    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9979    1.8758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5078    0.3065    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0599    0.9196    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7628   -0.4781    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.5697   -0.6496    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2107   -1.0912    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4657   -1.8758    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6857   -1.8028    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4308   -1.0182    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1337   -2.4159    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3267   -2.2444    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3887   -3.2005    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8366   -3.8136    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5660   -5.2547    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3506   -4.9997    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3110   -6.0393    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7960   -6.7067    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  6  7  1  0  0  0  0
  8  7  1  6  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
  8 17  1  0  0  0  0
 17 18  1  1  0  0  0
  5 19  1  1  0  0  0
 20 19  1  6  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 23 24  1  0  0  0  0
 25 24  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  6  0  0  0
 28 29  1  0  0  0  0
 27 30  1  0  0  0  0
 30 31  1  6  0  0  0
 30 32  1  0  0  0  0
 32 33  1  6  0  0  0
 32 34  1  0  0  0  0
 25 34  1  0  0  0  0
 34 35  1  1  0  0  0
 22 36  1  0  0  0  0
 36 37  1  6  0  0  0
 36 38  1  0  0  0  0
 38 39  1  1  0  0  0
 38 40  1  0  0  0  0
 20 40  1  0  0  0  0
 40 41  1  6  0  0  0
  5 42  1  0  0  0  0
 42 43  1  1  0  0  0
 42 44  1  0  0  0  0
  3 44  1  0  0  0  0
 44 45  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0308075

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@H]1O[C@@](CO[C@H]2[C@@H](O)O[C@H](CO)[C@H](O)[C@@H]2O)(O[C@H]2O[C@H](CO[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C24H42O21/c25-1-6-11(29)16(34)19(21(38)41-6)40-5-24(20(37)13(31)8(3-27)44-24)45-23-18(36)15(33)12(30)9(43-23)4-39-22-17(35)14(32)10(28)7(2-26)42-22/h6-23,25-38H,1-5H2/t6-,7-,8-,9-,10+,11+,12-,13-,14+,15+,16+,17-,18-,19-,20+,21+,22+,23-,24+/m1/s1

> <INCHI_KEY>
OSEGOMJCJRKRPD-XNSRJBNMSA-N

> <FORMULA>
C24H42O21

> <MOLECULAR_WEIGHT>
666.579

> <EXACT_MASS>
666.221858372

> <JCHEM_ACCEPTOR_COUNT>
21

> <JCHEM_ATOM_COUNT>
87

> <JCHEM_AVERAGE_POLARIZABILITY>
61.99532623313957

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
14

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,5R,6R)-3-{[(2S,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol

> <JCHEM_LOGP>
-8.070506255

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.80942336999065

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.188658517650365

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6786130721304886

> <JCHEM_POLAR_SURFACE_AREA>
347.83

> <JCHEM_REFRACTIVITY>
133.60070000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5R,6R)-3-{[(2S,3S,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-({[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  O   UNK     0       2.495 -13.926   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       1.869 -12.519   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.774 -11.273   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       2.298  -9.809   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       3.544  -8.904   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.513  -7.759   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.007  -8.079   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -0.023  -6.935   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.453  -5.470   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       1.959  -5.150   0.000  0.00  0.00           O+0
HETATM   11  O   UNK     0      -0.578  -4.326   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0      -2.084  -4.646   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -3.115  -3.501   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -4.621  -3.822   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -2.560  -6.111   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -4.067  -6.431   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -1.530  -7.255   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -2.006  -8.720   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       4.574  -7.759   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       4.098  -6.294   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       5.129  -5.150   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       4.653  -3.685   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.684  -2.541   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       7.190  -2.861   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       8.220  -1.717   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       7.744  -0.252   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       8.775   0.892   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       8.299   2.357   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       9.329   3.501   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      10.281   0.572   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      11.312   1.717   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      10.757  -0.892   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      12.263  -1.213   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       9.727  -2.037   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      10.203  -3.501   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       3.147  -3.365   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       2.671  -1.901   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0       2.116  -4.510   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0       0.610  -4.189   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0       2.592  -5.974   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0       1.562  -7.119   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0       4.790  -9.809   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0       6.254  -9.333   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0       4.314 -11.273   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0       5.219 -12.519   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   44                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   19   42                                             
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   17                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13   15                                                  
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15    8   18                                                  
CONECT   18   17                                                            
CONECT   19    5   20                                                       
CONECT   20   19   21   40                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   36                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   34                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   30                                                  
CONECT   28   27   29                                                       
CONECT   29   28                                                            
CONECT   30   27   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   25   35                                                  
CONECT   35   34                                                            
CONECT   36   22   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   20   41                                                  
CONECT   41   40                                                            
CONECT   42    5   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42    3   45                                                  
CONECT   45   44                                                            
MASTER        0    0    0    0    0    0    0    0   45    0   96    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₄H₄₂O₂₁

Average Mass

666.5790 Da

Monoisotopic Mass

666.22186 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

OC[C@H]1O[C@@](CO[C@H]2[C@@H](O)O[C@H](CO)[C@H](O)[C@@H]2O)(O[C@H]2O[C@H](CO[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@@H]1O

InChI Identifier

InChI=1S/C24H42O21/c25-1-6-11(29)16(34)19(21(38)41-6)40-5-24(20(37)13(31)8(3-27)44-24)45-23-18(36)15(33)12(30)9(43-23)4-39-22-17(35)14(32)10(28)7(2-26)42-22/h6-23,25-38H,1-5H2/t6-,7-,8-,9-,10+,11+,12-,13-,14+,15+,16+,17-,18-,19-,20+,21+,22+,23-,24+/m1/s1

InChI Key

OSEGOMJCJRKRPD-XNSRJBNMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Stellaria media	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Oligosaccharides

Alternative Parents

Substituents

Oligosaccharide
C-glycosyl compound
Glycosyl compound
O-glycosyl compound
Ketal
Oxane
Tetrahydrofuran
Hemiacetal
Secondary alcohol
Organoheterocyclic compound
Acetal
Oxacycle
Ether
Dialkyl ether
Polyol
Alcohol
Hydrocarbon derivative
Primary alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-8.1	ChemAxon
pKa (Strongest Acidic)	11.19	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	21	ChemAxon
Hydrogen Donor Count	14	ChemAxon
Polar Surface Area	347.83 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	133.6 m³·mol⁻¹	ChemAxon
Polarizability	62 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

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DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

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KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

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Wikipedia Link

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METLIN ID

Not Available

PubChem Compound

162983121

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol (NP0308075)

MOL for NP0308075 ((2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol)

3D MOL for NP0308075 ((2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol)

3D SDF for NP0308075 ((2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol)

3D-SDF for NP0308075 ((2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol)

PDB for NP0308075 ((2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol)

3D PDB for NP0308075 ((2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol)

SMILES for NP0308075 ((2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol)

INCHI for NP0308075 ((2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol)

Structure for NP0308075 ((2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol)

3D Structure for NP0308075 ((2s,3r,4s,5r,6r)-3-{[(2s,3s,4s,5r)-3,4-dihydroxy-5-(hydroxymethyl)-2-{[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}oxolan-2-yl]methoxy}-6-(hydroxymethyl)oxane-2,4,5-triol)