NP-MRD: Showing NP-Card for (1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one (NP0307974)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-11 01:27:55 UTC

Updated at

2022-09-11 01:27:55 UTC

NP-MRD ID

NP0307974

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one

Description

Allamcin belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring. (1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one is found in Plumeria rubra. (1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one was first documented in 2010 (PMID: 19937550). Based on a literature review very few articles have been published on Allamcin.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 35  0  0  0  0  0  0  0  0999 V2000
   -3.5837    1.8180   -0.5122 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6253    0.4282   -0.0117 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5013   -0.2692    0.0538 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4521   -1.6455    0.5342 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4245   -2.4729    0.6057 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1306   -1.8676    0.8968 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3269   -1.0808    0.0719 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1514   -1.7506   -1.1421 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4743   -1.8184   -1.1134 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0196   -1.2074    0.1107 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.1497   -0.3007   -0.2650 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6758    1.0329   -0.7393 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3446    2.0449   -0.0435 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3123    1.1934   -0.7422 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7802    0.9419    0.5138 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6132    1.1437    0.4650 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1249    0.1367   -0.3137 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8833   -0.5227    0.7827 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.9740    1.9468   -1.4193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2027    2.4946    0.2935 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6307    2.1451   -0.7705 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5859   -0.0111    0.3001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4617   -2.1260   -1.9272 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0780   -2.2696   -1.8978 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3879   -2.0140    0.7963 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8350   -0.2282    0.6159 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7569   -0.8505   -1.0415 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0213    1.1387   -1.8096 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7465    2.7337    0.2906 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2176    1.5801    1.2834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0111    0.3706   -1.3884 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8142   -0.7142    1.8775 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3 17  1  0
 17 16  1  0
 16 15  1  0
 15 14  1  0
 14 12  1  0
 12 13  1  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  2  0
  8  7  1  0
  7  6  1  1
  6  4  1  0
  4  5  2  0
  7 18  1  0
  4  3  1  0
  7 17  1  0
 18 15  1  0
 18 10  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  2 22  1  0
 17 31  1  6
 15 30  1  1
 12 28  1  6
 13 29  1  0
 11 26  1  0
 11 27  1  0
 10 25  1  1
  9 24  1  0
  8 23  1  0
 18 32  1  1
M  END


  Mrv1652309112203272D          

 18 21  0  0  1  0            999 V2000
    4.5059   -0.8112    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8266   -0.0511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3286    0.6067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5680    1.3962    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3474    1.6665    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8911    1.8678    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2334    1.3698    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.4728    2.1593    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7959    2.6310    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8445    1.9557    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0411    1.7683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8017    0.9788    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0018    0.7914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3657    0.3767    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1691    0.5641    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8460    0.0924    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5037    0.5904    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4085    1.3536    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  7  6  1  1  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
 10  9  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  1  0  0  0
 12 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  6  0  0  0
 17 16  1  1  0  0  0
  3 17  1  0  0  0  0
  7 17  1  0  0  0  0
 18 15  1  6  0  0  0
 10 18  1  0  0  0  0
  7 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0307974

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C1/[C@H]2O[C@@H]3O[C@@H](O)C[C@@H]4C=C[C@@]2(OC1=O)[C@H]34

> <INCHI_IDENTIFIER>
InChI=1S/C13H14O5/c1-2-7-10-13(18-11(7)15)4-3-6-5-8(14)16-12(17-10)9(6)13/h2-4,6,8-10,12,14H,5H2,1H3/b7-2+/t6-,8+,9-,10+,12-,13+/m0/s1

> <INCHI_KEY>
DWWKELQVGKIHDR-MXXFXNOVSA-N

> <FORMULA>
C13H14O5

> <MOLECULAR_WEIGHT>
250.25

> <EXACT_MASS>
250.084123551

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
24.238898558460065

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,4R,6R,8R,10R,11E,14R)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0^{1,10}.0^{4,14}]tetradec-2-en-12-one

> <JCHEM_LOGP>
1.1104770873333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.38954876113744

> <JCHEM_PKA_STRONGEST_BASIC>
-3.940611371878483

> <JCHEM_POLAR_SURFACE_AREA>
64.99000000000001

> <JCHEM_REFRACTIVITY>
61.155400000000014

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,4R,6R,8R,10R,11E,14R)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0^{1,10}.0^{4,14}]tetradec-2-en-12-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0       8.411  -1.514   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.010  -0.095   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.080   1.132   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.527   2.606   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       9.982   3.111   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0       7.263   3.487   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       6.036   2.557   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.483   4.031   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.219   4.911   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.443   3.651   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.943   3.301   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.496   1.827   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -0.003   1.477   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       2.549   0.703   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       4.049   1.053   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       5.312   0.172   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       6.540   1.102   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.496   2.527   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   17                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8   17   18                                             
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   18                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   18                                                  
CONECT   16   15   17                                                       
CONECT   17   16    3    7                                                  
CONECT   18   15   10    7                                                  
MASTER        0    0    0    0    0    0    0    0   18    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₁₄O₅

Average Mass

250.2500 Da

Monoisotopic Mass

250.08412 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C\C=C1/[C@H]2O[C@@H]3O[C@@H](O)C[C@@H]4C=C[C@@]2(OC1=O)[C@H]34

InChI Identifier

InChI=1S/C13H14O5/c1-2-7-10-13(18-11(7)15)4-3-6-5-8(14)16-12(17-10)9(6)13/h2-4,6,8-10,12,14H,5H2,1H3/b7-2+/t6-,8+,9-,10+,12-,13+/m0/s1

InChI Key

DWWKELQVGKIHDR-MXXFXNOVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Plumeria rubra	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as terpene lactones. These are prenol lipids containing a lactone ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Terpene lactones

Alternative Parents

Substituents

Terpene lactone
Iridoid-skeleton
Monoterpenoid
Furopyran
Furofuran
Gamma butyrolactone
Monosaccharide
Oxane
Pyran
Furan
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Oxolane
Lactone
Hemiacetal
Carboxylic acid ester
Monocarboxylic acid or derivatives
Acetal
Organoheterocyclic compound
Oxacycle
Carboxylic acid derivative
Carbonyl group
Organic oxide
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00010734

Chemspider ID

23327431

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44593375

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kuigoua GM, Kouam SF, Ngadjui BT, Schulz B, Green IR, Choudhary MI, Krohn K: Minor secondary metabolic products from the stem bark of Plumeria rubra Linn. displaying antimicrobial activities. Planta Med. 2010 Apr;76(6):620-5. doi: 10.1055/s-0029-1240611. Epub 2009 Nov 20. [PubMed:19937550 ]
LOTUS database [Link]

Showing NP-Card for (1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one (NP0307974)

MOL for NP0307974 ((1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one)

3D MOL for NP0307974 ((1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one)

3D SDF for NP0307974 ((1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one)

3D-SDF for NP0307974 ((1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one)

PDB for NP0307974 ((1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one)

3D PDB for NP0307974 ((1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one)

SMILES for NP0307974 ((1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one)

INCHI for NP0307974 ((1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one)

Structure for NP0307974 ((1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one)

3D Structure for NP0307974 ((1r,4r,6r,8r,10r,11e,14r)-11-ethylidene-6-hydroxy-7,9,13-trioxatetracyclo[6.5.1.0¹,¹⁰.0⁴,¹⁴]tetradec-2-en-12-one)