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Record Information
Version2.0
Created at2022-09-11 00:52:53 UTC
Updated at2022-09-11 00:52:53 UTC
NP-MRD IDNP0307626
Secondary Accession NumbersNone
Natural Product Identification
Common Name(+)-medicarpin
Description(+)-Medicarpin belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids. (+)-medicarpin is found in Arachis hypogaea, Caragana tibetica, Centrolobium sclerophyllum, Dalbergia decipularis, Dalbergia frutescens, Dalbergia nitidula, Dalbergia odorifera, Dalbergia riparia, Dalbergia sissoo, Dalbergia volubilis, Dalea versicolor, Gliricidia sepium, Hedysarum polybotrys, Maackia amurensis, Machaerium acutifolium, Machaerium aristulatum, Ononis vaginalis, Platymiscium floribundum, Psorothamnus spinosus, Sophora flavescens, Styphnolobium japonicum and Zollernia paraensis. (+)-medicarpin was first documented in 2021 (PMID: 35649147). Based on a literature review a small amount of articles have been published on (+)-medicarpin (PMID: 35974307) (PMID: 35959633) (PMID: 35874019) (PMID: 35381781).
Structure
Thumb
Synonyms
ValueSource
3-Hydroxy-9-methoxypterocarpanChEBI
MedicarpinChEBI
Chemical FormulaC16H14O4
Average Mass270.2840 Da
Monoisotopic Mass270.08921 Da
IUPAC Name(1S,10S)-14-methoxy-8,17-dioxatetracyclo[8.7.0.0^{2,7}.0^{11,16}]heptadeca-2,4,6,11,13,15-hexaen-5-ol
Traditional Name(1S,10S)-14-methoxy-8,17-dioxatetracyclo[8.7.0.0^{2,7}.0^{11,16}]heptadeca-2,4,6,11,13,15-hexaen-5-ol
CAS Registry NumberNot Available
SMILES
COC1=CC=C2[C@H]3COC4=CC(O)=CC=C4[C@H]3OC2=C1
InChI Identifier
InChI=1S/C16H14O4/c1-18-10-3-5-11-13-8-19-14-6-9(17)2-4-12(14)16(13)20-15(11)7-10/h2-7,13,16-17H,8H2,1H3/t13-,16-/m1/s1
InChI KeyNSRJSISNDPOJOP-CZUORRHYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Arachis hypogaeaLOTUS Database
Caragana tibeticaLOTUS Database
Centrolobium sclerophyllumLOTUS Database
Dalbergia decipularisLOTUS Database
Dalbergia frutescensLOTUS Database
Dalbergia nitidulaLOTUS Database
Dalbergia odoriferaLOTUS Database
Dalbergia ripariaLOTUS Database
Dalbergia sissooLOTUS Database
Dalbergia volubilisLOTUS Database
Dalea versicolorLOTUS Database
Gliricidia sepiumLOTUS Database
Hedysarum polybotrysLOTUS Database
Maackia amurensisLOTUS Database
Machaerium acutifoliumLOTUS Database
Machaerium aristulatumLOTUS Database
Ononis vaginalisLOTUS Database
Platymiscium floribundumLOTUS Database
Psorothamnus spinosusLOTUS Database
Sophora flavescensLOTUS Database
Styphnolobium japonicumLOTUS Database
Zollernia paraensisLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassFuranoisoflavonoids
Direct ParentPterocarpans
Alternative Parents
Substituents
  • Pterocarpan
  • Isoflavanol
  • Isoflavan
  • Chromane
  • 1-benzopyran
  • Benzopyran
  • Coumaran
  • Benzofuran
  • Anisole
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Benzenoid
  • Oxacycle
  • Organoheterocyclic compound
  • Ether
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.51ChemAxon
pKa (Strongest Acidic)9.42ChemAxon
pKa (Strongest Basic)-4.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area47.92 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity73.06 m³·mol⁻¹ChemAxon
Polarizability28.24 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID65860
KEGG Compound IDC01729
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound73067
PDB IDNot Available
ChEBI ID6714
Good Scents IDNot Available
References
General References
  1. Xia X, Gong R, Zhang C: Integrative analysis of transcriptome and metabolome reveals flavonoid biosynthesis regulation in Rhododendron pulchrum petals. BMC Plant Biol. 2022 Aug 16;22(1):401. doi: 10.1186/s12870-022-03762-y. [PubMed:35974307 ]
  2. Sharma K, Awasthi P, Prakash R, Khanka S, Bajpai R, Sahasrabuddhe AA, Goel A, Singh D: Maintenance of increased bone mass after PTH withdrawal by sequential medicarpin treatment via augmentation of cAMP-PKA pathway. J Cell Biochem. 2022 Aug 12. doi: 10.1002/jcb.30313. [PubMed:35959633 ]
  3. Alvarez-Rivera G, Sanz A, Cifuentes A, Ibanez E, Paape T, Lucas MM, Pueyo JJ: Flavonoid Accumulation Varies in Medicago truncatula in Response to Mercury Stress. Front Plant Sci. 2022 Jul 7;13:933209. doi: 10.3389/fpls.2022.933209. eCollection 2022. [PubMed:35874019 ]
  4. Chern CM, Lu CK, Liou KT, Wang YH, Tsai KC, Chang CL, Chang CC, Shen YC: Medicarpin isolated from Radix Hedysari ameliorates brain injury in a murine model of cerebral ischemia. J Food Drug Anal. 2021 Dec 15;29(4):581-605. doi: 10.38212/2224-6614.3377. [PubMed:35649147 ]
  5. Yigin AK, Donmez H, Hitit M, Seven S, Eser N, Kurar E, Seven M: The effect of medicarpin on PTEN/AKT signal pathway in head and neck squamous cell carcinoma. J Cancer Res Ther. 2022 Jan-Mar;18(1):180-184. doi: 10.4103/jcrt.jcrt_641_21. [PubMed:35381781 ]
  6. LOTUS database [Link]