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Record Information
Version2.0
Created at2022-09-10 23:54:48 UTC
Updated at2022-09-10 23:54:48 UTC
NP-MRD IDNP0307048
Secondary Accession NumbersNone
Natural Product Identification
Common Name1,4-bis[(4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)methyl] (2r)-2-{[(2s,3r,4s,5r,6r)-6-[(acetyloxy)methyl]-3,5-dihydroxy-4-{[(2z)-3-phenylprop-2-enoyl]oxy}oxan-2-yl]oxy}-2-(2-methylpropyl)butanedioate
DescriptionGymnoside X belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose. 1,4-bis[(4-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)methyl] (2r)-2-{[(2s,3r,4s,5r,6r)-6-[(acetyloxy)methyl]-3,5-dihydroxy-4-{[(2z)-3-phenylprop-2-enoyl]oxy}oxan-2-yl]oxy}-2-(2-methylpropyl)butanedioate is found in Gymnadenia conopsea. Based on a literature review very few articles have been published on Gymnoside X.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC51H64O24
Average Mass1061.0490 Da
Monoisotopic Mass1060.37875 Da
IUPAC Name1,4-bis[(4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)methyl] (2R)-2-{[(2S,3R,4S,5R,6R)-6-[(acetyloxy)methyl]-3,5-dihydroxy-4-{[(2Z)-3-phenylprop-2-enoyl]oxy}oxan-2-yl]oxy}-2-(2-methylpropyl)butanedioate
Traditional Name1,4-bis[(4-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)methyl] (2R)-2-{[(2S,3R,4S,5R,6R)-6-[(acetyloxy)methyl]-3,5-dihydroxy-4-{[(2Z)-3-phenylprop-2-enoyl]oxy}oxan-2-yl]oxy}-2-(2-methylpropyl)butanedioate
CAS Registry NumberNot Available
SMILES
CC(C)C[C@](CC(=O)OCC1=CC=C(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)C=C1)(O[C@@H]1O[C@H](COC(C)=O)[C@@H](O)[C@H](OC(=O)\C=C/C2=CC=CC=C2)[C@H]1O)C(=O)OCC1=CC=C(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)C=C1
InChI Identifier
InChI=1S/C51H64O24/c1-26(2)19-51(50(65)68-24-30-11-16-32(17-12-30)70-48-44(63)42(61)39(58)34(22-53)72-48,20-37(56)67-23-29-9-14-31(15-10-29)69-47-43(62)41(60)38(57)33(21-52)71-47)75-49-45(64)46(40(59)35(73-49)25-66-27(3)54)74-36(55)18-13-28-7-5-4-6-8-28/h4-18,26,33-35,38-49,52-53,57-64H,19-25H2,1-3H3/b18-13-/t33-,34-,35-,38-,39-,40-,41+,42+,43-,44-,45-,46+,47-,48-,49+,51-/m1/s1
InChI KeyVNORMJNLBQYATD-VIAIADOOSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Gymnadenia conopseaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentPhenolic glycosides
Alternative Parents
Substituents
  • Phenolic glycoside
  • Fatty acyl glycoside of mono- or disaccharide
  • Fatty acyl glycoside
  • Tetracarboxylic acid or derivatives
  • Alkyl glycoside
  • Cinnamic acid ester
  • Cinnamic acid or derivatives
  • O-glycosyl compound
  • Benzyloxycarbonyl
  • Styrene
  • Phenoxy compound
  • Phenol ether
  • Fatty acid ester
  • Benzenoid
  • Fatty acyl
  • Oxane
  • Monocyclic benzene moiety
  • Monosaccharide
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Secondary alcohol
  • Carboxylic acid ester
  • Acetal
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Oxacycle
  • Polyol
  • Alcohol
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Primary alcohol
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.87ChemAxon
pKa (Strongest Acidic)11.74ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count20ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area362.88 ŲChemAxon
Rotatable Bond Count26ChemAxon
Refractivity251.41 m³·mol⁻¹ChemAxon
Polarizability106.29 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00030444
Chemspider ID9760928
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11586164
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]