NP-MRD: Showing NP-Card for (3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one (NP0306968)

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Record Information

Version

2.0

Created at

2022-09-10 23:46:46 UTC

Updated at

2022-09-10 23:46:46 UTC

NP-MRD ID

NP0306968

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one

Description

Debromodiscorhabdin A belongs to the class of organic compounds known as phenanthrolines. These are aromatic polycyclic compounds containing the phenanthroline skeleton, which is a derivative of phenanthrene, and consists of two pyridine rings non-linearly joined by a benzene ring. Based on a literature review very few articles have been published on Debromodiscorhabdin A.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112201462D          

 24 29  0  0  1  0            999 V2000
    5.1887   -0.7566    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6080   -0.1706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8068   -0.3888    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2055    0.1750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4022    0.9952    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3888    1.7274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4577    2.4397    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5792    2.4754    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0900    1.7689    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2650    1.7685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8521    2.4827    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8529    1.0538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2657    0.3395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0907    0.3400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5185    1.0275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3282   -0.6161    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7765   -1.2294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9694   -1.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7140   -0.2739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0398    0.0613    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0460    0.8818    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2747    2.1227    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.2551    1.2349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8335    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  7  6  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  9 15  2  0  0  0  0
  5 15  1  0  0  0  0
 14 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 13 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 12 21  1  0  0  0  0
  7 22  1  0  0  0  0
 22 23  1  0  0  0  0
  5 23  1  0  0  0  0
 23 24  1  0  0  0  0
  2 24  1  0  0  0  0
M  END

     RDKit          3D

 39 44  0  0  0  0  0  0  0  0999 V2000
   -2.8757   -3.1339   -0.9398 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4000   -2.1231   -0.3980 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9397   -2.0690    0.9793 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5329   -0.9421    1.5082 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5186    0.3108    0.7591 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9540    1.4969    1.6301 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0914    2.6606    0.6944 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7938    3.0686    0.2158 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.1230    1.9681   -0.0087 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3810    2.2799   -0.4850 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6866    3.5902   -0.7452 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3611    1.3197   -0.7154 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0299    0.0160   -0.4464 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7788   -0.3218    0.0305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2022    0.6523    0.2579 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6278   -1.5703    0.2573 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.5454   -2.6311    0.0910 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8890   -2.2864   -0.4762 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0062   -0.8206   -0.6896 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1006    0.0291   -1.1723 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7042    1.2855   -1.1812 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8407    1.8637   -0.7961 S   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6487    0.1975   -0.2584 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2914   -0.8513   -1.2357 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9459   -2.9959    1.5513 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2063   -1.0140    2.5512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1136    1.6511    2.3426 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8717    1.2774    2.1811 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7244    3.4621    1.0601 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5279    4.0578    0.0436 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5880    3.8727   -1.0935 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0853   -3.4420   -0.5462 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6794   -3.1307    1.0943 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0629   -2.8382   -1.4451 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6917   -2.6471    0.2004 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0601   -0.3616   -1.4620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5518   -0.1895    0.3105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0895   -0.9211   -1.9950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2806   -0.7703   -1.6687 H   0  0  0  0  0  0  0  0  0  0  0  0
 11 10  1  0
 10 12  2  0
 12 21  1  0
 21 20  2  0
 20 19  1  0
 19 13  2  0
 13 14  1  0
 14 16  2  0
 16 17  1  0
 17 18  1  0
 14 15  1  0
 15  9  2  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  1
  4  3  2  0
  3  2  1  0
  2  1  2  0
  2 24  1  0
 24 23  1  0
 23 22  1  0
  9 10  1  0
 22  7  1  0
 13 12  1  0
  5 15  1  0
 23  5  1  0
 18 19  1  0
 11 31  1  0
 20 36  1  0
 17 32  1  0
 17 33  1  0
 18 34  1  0
 18 35  1  0
  8 30  1  0
  7 29  1  1
  6 27  1  0
  6 28  1  0
  4 26  1  0
  3 25  1  0
 24 38  1  0
 24 39  1  0
 23 37  1  1
M  END


  Mrv1652309112201462D          

 24 29  0  0  1  0            999 V2000
    5.1887   -0.7566    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6080   -0.1706    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8068   -0.3888    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2055    0.1750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4022    0.9952    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.3888    1.7274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4577    2.4397    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5792    2.4754    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0900    1.7689    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2650    1.7685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8521    2.4827    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8529    1.0538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2657    0.3395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0907    0.3400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5185    1.0275    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3282   -0.6161    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7765   -1.2294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9694   -1.0584    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7140   -0.2739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0398    0.0613    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0460    0.8818    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2747    2.1227    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    4.2551    1.2349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8335    0.6294    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  7  6  1  6  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  9 15  2  0  0  0  0
  5 15  1  0  0  0  0
 14 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 13 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 12 21  1  0  0  0  0
  7 22  1  0  0  0  0
 22 23  1  0  0  0  0
  5 23  1  0  0  0  0
 23 24  1  0  0  0  0
  2 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0306968

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=C2N=CC3=C2C(=NCC3)C2=C1N[C@@H]1C[C@]22C=CC(=O)CC2S1

> <INCHI_IDENTIFIER>
InChI=1S/C18H15N3O2S/c22-9-1-3-18-6-11(24-10(18)5-9)21-16-13(18)14-12-8(2-4-19-14)7-20-15(12)17(16)23/h1,3,7,10-11,21,23H,2,4-6H2/t10?,11-,18-/m0/s1

> <INCHI_KEY>
FPVLFJBBECQJLT-PZTXTRHNSA-N

> <FORMULA>
C18H15N3O2S

> <MOLECULAR_WEIGHT>
337.4

> <EXACT_MASS>
337.088497909

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
34.37818414667423

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,10S)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1^{3,10}.0^{2,12}.0^{3,8}.0^{17,21}]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one

> <JCHEM_LOGP>
-0.9440038845842728

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
2

> <JCHEM_PKA>
17.45568525143718

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.113945783878613

> <JCHEM_PKA_STRONGEST_BASIC>
7.886793206223906

> <JCHEM_POLAR_SURFACE_AREA>
74.05

> <JCHEM_REFRACTIVITY>
96.8022

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3S,10S)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1^{3,10}.0^{2,12}.0^{3,8}.0^{17,21}]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  O   UNK     0       9.686  -1.412   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       8.602  -0.319   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.106  -0.726   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.984   0.327   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.351   1.858   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.326   3.224   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.454   4.554   0.000  0.00  0.00           C+0
HETATM    8  N   UNK     0       4.814   4.621   0.000  0.00  0.00           N+0
HETATM    9  C   UNK     0       3.901   3.302   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.361   3.301   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       1.591   4.634   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       1.592   1.967   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.363   0.634   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.903   0.635   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.701   1.918   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0       4.346  -1.150   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       3.316  -2.295   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.810  -1.976   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.333  -0.511   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.074   0.114   0.000  0.00  0.00           C+0
HETATM   21  N   UNK     0       0.086   1.646   0.000  0.00  0.00           N+0
HETATM   22  S   UNK     0       7.979   3.962   0.000  0.00  0.00           S+0
HETATM   23  C   UNK     0       7.943   2.305   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.023   1.175   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   24                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   15   23                                             
CONECT    6    5    7                                                       
CONECT    7    6    8   22                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   15                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   21                                                  
CONECT   13   12   14   19                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14    9    5                                                  
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   13   20                                                  
CONECT   20   19   21                                                       
CONECT   21   20   12                                                       
CONECT   22    7   23                                                       
CONECT   23   22    5   24                                                  
CONECT   24   23    2                                                       
MASTER        0    0    0    0    0    0    0    0   24    0   58    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₁₅N₃O₂S

Average Mass

337.4000 Da

Monoisotopic Mass

337.08850 Da

IUPAC Name

(3S,10S)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1^{3,10}.0^{2,12}.0^{3,8}.0^{17,21}]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one

Traditional Name

(3S,10S)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1^{3,10}.0^{2,12}.0^{3,8}.0^{17,21}]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one

CAS Registry Number

Not Available

SMILES

OC1=C2N=CC3=C2C(=NCC3)C2=C1N[C@@H]1C[C@]22C=CC(=O)CC2S1

InChI Identifier

InChI=1S/C18H15N3O2S/c22-9-1-3-18-6-11(24-10(18)5-9)21-16-13(18)14-12-8(2-4-19-14)7-20-15(12)17(16)23/h1,3,7,10-11,21,23H,2,4-6H2/t10?,11-,18-/m0/s1

InChI Key

FPVLFJBBECQJLT-PZTXTRHNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenanthrolines. These are aromatic polycyclic compounds containing the phenanthroline skeleton, which is a derivative of phenanthrene, and consists of two pyridine rings non-linearly joined by a benzene ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Phenanthrolines

Sub Class

Not Available

Direct Parent

Phenanthrolines

Alternative Parents

Substituents

1,7-phenanthroline
Tetrahydroquinoline
Indole or derivatives
Cyclohexenone
Secondary aliphatic/aromatic amine
Benzenoid
Thiolane
Cyclic ketone
Ketone
Azacycle
Dialkylthioether
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Thioether
Secondary amine
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Imine
Carbonyl group
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.94	ChemAxon
pKa (Strongest Acidic)	9.11	ChemAxon
pKa (Strongest Basic)	7.89	ChemAxon
Physiological Charge	2	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	74.05 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	96.8 m³·mol⁻¹	ChemAxon
Polarizability	34.38 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

136669053

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one (NP0306968)

MOL for NP0306968 ((3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one)

3D MOL for NP0306968 ((3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one)

3D SDF for NP0306968 ((3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one)

3D-SDF for NP0306968 ((3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one)

PDB for NP0306968 ((3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one)

3D PDB for NP0306968 ((3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one)

SMILES for NP0306968 ((3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one)

INCHI for NP0306968 ((3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one)

Structure for NP0306968 ((3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one)

3D Structure for NP0306968 ((3s,10s)-13-hydroxy-9-thia-11,15,20-triazahexacyclo[12.6.1.1³,¹⁰.0²,¹².0³,⁸.0¹⁷,²¹]docosa-1(20),2(12),4,13,15,17(21)-hexaen-6-one)