NP-MRD: Showing NP-Card for (1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol (NP0306705)

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Record Information

Version

2.0

Created at

2022-09-10 23:21:09 UTC

Updated at

2022-09-10 23:21:09 UTC

NP-MRD ID

NP0306705

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol

Description

Dumortenol belongs to the class of organic compounds known as tertiary alcohols. Tertiary alcohols are compounds in which a hydroxy group, -OH, is attached to a saturated carbon atom R3COH (R not H ). (1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol is found in Dumortiera hirsuta. (1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol was first documented in 2019 (PMID: 31671644). Based on a literature review very few articles have been published on Dumortenol.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309112201212D          

 16 17  0  0  1  0            999 V2000
    2.9369    1.0649    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2526    0.3027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0776    0.3027    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6610   -0.2806    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6610   -1.1056    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4232   -1.4214    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0776   -1.6890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3933   -2.4512    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2526   -1.6890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6693   -1.1056    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6693   -0.2806    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8846   -0.0257    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3997   -0.6931    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8846   -1.3606    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2774   -1.9190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0477   -2.1693    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  2  0  0  0  0
 10  9  1  1  0  0  0
 10 11  1  0  0  0  0
  2 11  1  0  0  0  0
 11 12  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 10 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0306705

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CCC(=C)[C@H]2CC[C@@](C)(O)[C@@H]2\C=C1\C

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O/c1-10-5-6-11(2)13-7-8-15(4,16)14(13)9-12(10)3/h9-10,13-14,16H,2,5-8H2,1,3-4H3/b12-9-/t10-,13-,14-,15-/m1/s1

> <INCHI_KEY>
LMBNOBPWWFAPHY-HSCFWAFJSA-N

> <FORMULA>
C15H24O

> <MOLECULAR_WEIGHT>
220.356

> <EXACT_MASS>
220.182715393

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
26.994323575848256

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,3aS,7R,9aR)-1,7,8-trimethyl-4-methylidene-1H,2H,3H,3aH,4H,5H,6H,7H,9aH-cyclopenta[8]annulen-1-ol

> <JCHEM_LOGP>
3.191074143

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.622469681994897

> <JCHEM_PKA_STRONGEST_BASIC>
-0.7769317610954313

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
69.208

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,3aS,7R,9aR)-1,7,8-trimethyl-4-methylidene-2H,3H,3aH,5H,6H,7H,9aH-cyclopenta[8]annulen-1-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0       5.482   1.988   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.072   0.565   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.612   0.565   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.701  -0.524   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.701  -2.064   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.123  -2.653   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.612  -3.153   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.201  -4.576   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.072  -3.153   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.983  -2.064   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.983  -0.524   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.518  -0.048   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.613  -1.294   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.518  -2.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.384  -3.582   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       3.822  -4.049   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   11                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   14                                                  
CONECT   11   10    2   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   10   15   16                                             
CONECT   15   14                                                            
CONECT   16   14                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄O

Average Mass

220.3560 Da

Monoisotopic Mass

220.18272 Da

IUPAC Name

(1R,3aS,7R,9aR)-1,7,8-trimethyl-4-methylidene-1H,2H,3H,3aH,4H,5H,6H,7H,9aH-cyclopenta[8]annulen-1-ol

Traditional Name

(1R,3aS,7R,9aR)-1,7,8-trimethyl-4-methylidene-2H,3H,3aH,5H,6H,7H,9aH-cyclopenta[8]annulen-1-ol

CAS Registry Number

Not Available

SMILES

C[C@@H]1CCC(=C)[C@H]2CC[C@@](C)(O)[C@@H]2\C=C1\C

InChI Identifier

InChI=1S/C15H24O/c1-10-5-6-11(2)13-7-8-15(4,16)14(13)9-12(10)3/h9-10,13-14,16H,2,5-8H2,1,3-4H3/b12-9-/t10-,13-,14-,15-/m1/s1

InChI Key

LMBNOBPWWFAPHY-HSCFWAFJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Dumortiera hirsuta	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tertiary alcohols. Tertiary alcohols are compounds in which a hydroxy group, -OH, is attached to a saturated carbon atom R3COH (R not H ).

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Alcohols and polyols

Direct Parent

Tertiary alcohols

Alternative Parents

Substituents

Tertiary alcohol
Cyclic alcohol
Hydrocarbon derivative
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.19	ChemAxon
pKa (Strongest Acidic)	19.62	ChemAxon
pKa (Strongest Basic)	-0.78	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	69.21 m³·mol⁻¹	ChemAxon
Polarizability	26.99 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00039054

Chemspider ID

8903001

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10727668

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Qin GF, Liang HB, Liu WX, Zhu F, Li PL, Li GQ, Yao JC: Bicyclo [6.3.0] Undecane Sesquiterpenoids: Structures, Biological Activities, and Syntheses. Molecules. 2019 Oct 30;24(21). pii: molecules24213912. doi: 10.3390/molecules24213912. [PubMed:31671644 ]
LOTUS database [Link]

Showing NP-Card for (1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol (NP0306705)

MOL for NP0306705 ((1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol)

3D MOL for NP0306705 ((1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol)

3D SDF for NP0306705 ((1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol)

3D-SDF for NP0306705 ((1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol)

PDB for NP0306705 ((1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol)

3D PDB for NP0306705 ((1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol)

SMILES for NP0306705 ((1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol)

INCHI for NP0306705 ((1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol)

Structure for NP0306705 ((1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol)

3D Structure for NP0306705 ((1r,3as,7r,9ar)-1,7,8-trimethyl-4-methylidene-2h,3h,3ah,5h,6h,7h,9ah-cyclopenta[8]annulen-1-ol)