NP-MRD: Showing NP-Card for 5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol (NP0306095)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-10 22:21:36 UTC

Updated at

2022-09-10 22:21:36 UTC

NP-MRD ID

NP0306095

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol

Description

5-(2-{[2-(3,4-Dihydroxypent-1-en-1-yl)-4-hydroxy-3-(methoxymethyl)phenyl]methyl}-3-hydroxyphenyl)pent-4-ene-2,3-diol belongs to the class of organic compounds known as diphenylmethanes. Diphenylmethanes are compounds containing a diphenylmethane moiety, which consists of a methane wherein two hydrogen atoms are replaced by two phenyl groups. 5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol is found in Sordaria macrospora. Based on a literature review very few articles have been published on 5-(2-{[2-(3,4-dihydroxypent-1-en-1-yl)-4-hydroxy-3-(methoxymethyl)phenyl]methyl}-3-hydroxyphenyl)pent-4-ene-2,3-diol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309112200212D          

 32 33  0  0  0  0            999 V2000
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 11 17  1  0  0  0  0
 18 17  1  4  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
  9 25  2  0  0  0  0
  4 25  1  0  0  0  0
 26 25  1  4  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
M  END

     RDKit          3D

 64 65  0  0  0  0  0  0  0  0999 V2000
   -6.0704   -3.2300    0.4495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0997   -2.8454   -0.4774 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9584   -2.4239    0.2091 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8030   -2.0619   -0.6386 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2584   -3.1187   -1.3862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9356   -4.3158   -1.5575 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0304   -2.9935   -1.9799 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3455   -1.8038   -1.8190 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9063   -0.7637   -1.0649 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0944    0.2528   -0.5473 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1469   -0.6938    0.0785 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7017   -1.5569    1.0288 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6179   -1.5575    1.5189 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5348   -2.5312    1.6137 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8171   -2.5218    1.1447 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2757   -1.6702    0.2004 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4456   -0.7032   -0.3721 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9043    0.2087   -1.3911 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1476    0.7157   -1.4155 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2208    0.4765   -0.4577 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7932    0.3988    0.8871 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1993    1.6889   -0.4486 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2816    1.4482    0.5974 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4542    2.7777   -0.0132 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1380   -0.8474   -0.4676 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7211    0.2575    0.2007 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4568    1.5370    0.1351 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1770    2.5799    0.9404 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.4460    2.7111    2.1776 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2095    3.9245    0.2776 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.2450    4.1275   -0.7687 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9360    4.3005   -0.0786 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4425   -2.3665    1.0184 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7946   -3.8722   -0.0324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5369   -3.8686    1.2511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6417   -3.1191    0.9641 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2960   -1.5046    0.7855 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8274   -4.4683   -1.1626 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6001   -3.8032   -2.5607 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6167   -1.6505   -2.2821 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1938    0.7633    0.3544 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4855    0.7981   -1.3792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9516   -2.1954    2.1921 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1550   -3.1954    2.3529 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5264   -3.2655    1.5475 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2723   -1.7452   -0.2072 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2522    0.5386   -2.2161 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3963    1.3757   -2.2635 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8661   -0.3767   -0.6923 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2620    1.0108    1.4770 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6228    1.8223   -1.4484 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0369    1.9823    1.5517 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4173    0.3771    0.6946 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.2144    1.9253    0.2303 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4347    3.5344   -0.6290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5174    0.0776    0.9502 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7419    1.9437   -0.5620 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1867    2.2589    1.2019 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4745    2.5831    1.9642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5002    4.6614    1.1249 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7365    3.2312   -1.1583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0787    4.8199   -0.4289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8581    4.6571   -1.6952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8420    5.3035   -0.1615 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  5  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 12 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
 19 20  1  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
 22 24  1  0
  9 25  2  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 30 32  1  0
 25  4  1  0
 17 11  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
  3 36  1  0
  3 37  1  0
  6 38  1  0
  7 39  1  0
  8 40  1  0
 10 41  1  0
 10 42  1  0
 13 43  1  0
 14 44  1  0
 15 45  1  0
 16 46  1  0
 18 47  1  0
 19 48  1  0
 20 49  1  6
 21 50  1  0
 22 51  1  6
 23 52  1  0
 23 53  1  0
 23 54  1  0
 24 55  1  0
 26 56  1  0
 27 57  1  0
 28 58  1  1
 29 59  1  0
 30 60  1  1
 31 61  1  0
 31 62  1  0
 31 63  1  0
 32 64  1  0
M  END


  Mrv1652309112200212D          

 32 33  0  0  0  0            999 V2000
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 11 17  1  0  0  0  0
 18 17  1  4  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
  9 25  2  0  0  0  0
  4 25  1  0  0  0  0
 26 25  1  4  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0306095

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COCC1=C(O)C=CC(CC2=C(O)C=CC=C2C=CC(O)C(C)O)=C1C=CC(O)C(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C25H32O7/c1-15(26)22(28)10-7-17-5-4-6-24(30)20(17)13-18-8-11-25(31)21(14-32-3)19(18)9-12-23(29)16(2)27/h4-12,15-16,22-23,26-31H,13-14H2,1-3H3

> <INCHI_KEY>
XPBZOXVPRZUJPE-UHFFFAOYSA-N

> <FORMULA>
C25H32O7

> <MOLECULAR_WEIGHT>
444.524

> <EXACT_MASS>
444.21480337

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
48.72381102839819

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol

> <JCHEM_LOGP>
2.5912979133333325

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.674675259517654

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.982461229901437

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0343931374544146

> <JCHEM_POLAR_SURFACE_AREA>
130.61

> <JCHEM_REFRACTIVITY>
126.35570000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 11-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   11-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.667   0.000   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -1.334  -6.930   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -2.667  -9.240   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -4.001 -10.010   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -5.335  -9.240   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -9.336  -5.390   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -8.002  -3.080   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -9.336  -2.310   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -6.668  -2.310   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -5.335   0.000   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -6.668  -0.770   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -5.335   1.540   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -4.001   2.310   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -6.668   2.310   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   25                                                  
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   25                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   11   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25    9    4   26                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₂O₇

Average Mass

444.5240 Da

Monoisotopic Mass

444.21480 Da

IUPAC Name

5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol

Traditional Name

5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol

CAS Registry Number

Not Available

SMILES

COCC1=C(O)C=CC(CC2=C(O)C=CC=C2C=CC(O)C(C)O)=C1C=CC(O)C(C)O

InChI Identifier

InChI=1S/C25H32O7/c1-15(26)22(28)10-7-17-5-4-6-24(30)20(17)13-18-8-11-25(31)21(14-32-3)19(18)9-12-23(29)16(2)27/h4-12,15-16,22-23,26-31H,13-14H2,1-3H3

InChI Key

XPBZOXVPRZUJPE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sordaria macrospora	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diphenylmethanes. Diphenylmethanes are compounds containing a diphenylmethane moiety, which consists of a methane wherein two hydrogen atoms are replaced by two phenyl groups.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Diphenylmethanes

Direct Parent

Diphenylmethanes

Alternative Parents

Substituents

Diphenylmethane
Cinnamyl alcohol
Benzylether
Styrene
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Secondary alcohol
Ether
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.59	ChemAxon
pKa (Strongest Acidic)	8.98	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	130.61 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	126.36 m³·mol⁻¹	ChemAxon
Polarizability	48.72 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163065430

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol (NP0306095)

MOL for NP0306095 (5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol)

3D MOL for NP0306095 (5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol)

3D SDF for NP0306095 (5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol)

3D-SDF for NP0306095 (5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol)

PDB for NP0306095 (5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol)

3D PDB for NP0306095 (5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol)

SMILES for NP0306095 (5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol)

INCHI for NP0306095 (5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol)

Structure for NP0306095 (5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol)

3D Structure for NP0306095 (5-(6-{[2-(3,4-dihydroxypent-1-en-1-yl)-6-hydroxyphenyl]methyl}-3-hydroxy-2-(methoxymethyl)phenyl)pent-4-ene-2,3-diol)