NP-MRD: Showing NP-Card for {[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid (NP0305440)

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Record Information

Version

2.0

Created at

2022-09-10 21:17:15 UTC

Updated at

2022-09-10 21:17:15 UTC

NP-MRD ID

NP0305440

Secondary Accession Numbers

None

Natural Product Identification

Common Name

{[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid

Description

Amipurimycin belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups. {[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid is found in Streptomyces novoguineensis. Amipurimycin is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004251515372D          

 35 38  0  0  0  0            999 V2000
    3.0850   -7.0106    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2600   -7.0106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7751   -7.6780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9904   -7.4231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9904   -6.5981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7751   -6.3432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0300   -5.5585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8370   -5.3870    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4780   -4.9454    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7329   -4.1608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1809   -3.5477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3739   -3.7192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1781   -3.1062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6860   -3.7563    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9066   -2.7188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9354   -1.8943    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6062   -3.1560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3346   -2.7687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0768   -2.3215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4752   -1.7084    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -2.1500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4358   -2.7631    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668   -1.5229    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5399   -3.9893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7948   -3.2047    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0919   -4.6024    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  2  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 13 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 11 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  2  0  0  0  0
 23 32  1  0  0  0  0
 26 32  1  0  0  0  0
 10 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
M  END

     RDKit          3D

 64 67  0  0  0  0  0  0  0  0999 V2000
   -4.3772    3.0170    2.9359 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5934    3.1792    1.7600 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4413    4.3984    1.1775 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7151    4.6096    0.0701 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0809    3.5600   -0.5286 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2967    3.3692   -1.5989 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9658    2.0748   -1.6884 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5384    1.4120   -0.6673 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4244   -0.0001   -0.4096 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4836   -0.2915    0.5765 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0250   -1.5811    0.3111 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.1845   -1.3976   -0.6121 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1325   -0.5949    0.1373 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5704    0.6771   -0.2897 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1393    1.1576   -1.3555 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5369    1.4359    0.5246 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9439    2.7104   -0.2113 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3802    2.8806    0.1890 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9207    1.4863    0.0896 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8147    0.6428    0.6699 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.0640    0.2746    2.0434 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7666   -2.6817   -1.0404 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9467   -2.9378   -0.7346 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0535   -3.6168   -1.7703 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0813   -2.4472   -0.2876 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4831   -2.1090    0.1313 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6909   -2.6264    1.4082 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4601   -2.7787   -0.8053 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.7504   -2.4796   -0.3332 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3298   -4.2663   -0.8203 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3150   -4.7696   -1.6736 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7282   -0.6029    0.1024 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8174   -0.2487   -0.6437 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2298    2.3162    0.0569 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9667    2.1464    1.1670 N   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0506    3.3850    3.8322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2812    2.5187    2.8562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5975    5.5816   -0.3886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3297    1.6344   -2.4712 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2110   -0.5060   -1.3744 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3294   -1.9782    1.2920 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9092   -0.8251   -1.5165 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4851   -1.0076    1.0266 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1309    1.7319    1.5036 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3027    3.5629    0.0557 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9317    2.4920   -1.3009 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4893    3.3088    1.2123 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8927    3.5274   -0.5539 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8657    1.3493    0.6588 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1222    1.2525   -0.9667 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7428   -0.3028    0.0625 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6714   -0.5983    2.0227 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6401    1.0327    2.4830 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9866   -3.5081   -2.7845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9693   -2.5246   -1.3885 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8904   -3.4955    0.0883 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2953   -2.0875    2.1215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3562   -2.3487   -1.8024 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7216   -2.7209    0.6428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3643   -4.6323   -1.2010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4377   -4.6752    0.2068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1571   -5.7463   -1.7633 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8464   -0.2269    1.1562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6511   -0.1115   -1.5899 H   0  0  0  0  0  0  0  0  0  0  0  0
 21 20  1  0
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 16 14  1  0
 14 15  2  0
 14 13  1  0
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 11 25  1  0
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 26 27  1  1
 26 28  1  0
 28 29  1  0
 28 30  1  0
 30 31  1  0
 26 32  1  0
 32 33  1  0
 32  9  1  0
  9 10  1  0
  9  8  1  0
  8  7  1  0
  7  6  2  0
  6  5  1  0
  5  4  2  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  2 35  1  0
 35 34  2  0
 12 22  1  0
 22 24  1  0
 22 23  2  0
 16 20  1  0
 10 11  1  0
 34  8  1  0
 34  5  1  0
 21 52  1  0
 21 53  1  0
 20 51  1  6
 19 49  1  0
 19 50  1  0
 18 47  1  0
 18 48  1  0
 17 45  1  0
 17 46  1  0
 16 44  1  1
 13 43  1  0
 12 42  1  6
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 25 55  1  0
 25 56  1  0
 27 57  1  0
 28 58  1  6
 29 59  1  0
 30 60  1  0
 30 61  1  0
 31 62  1  0
 32 63  1  1
 33 64  1  0
  9 40  1  6
  7 39  1  0
  4 38  1  0
  1 36  1  0
  1 37  1  0
 24 54  1  0
M  END


  Mrv1533004251515372D          

 35 38  0  0  0  0            999 V2000
    3.0850   -7.0106    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2600   -7.0106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7751   -7.6780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9904   -7.4231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9904   -6.5981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7751   -6.3432    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0300   -5.5585    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8370   -5.3870    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4780   -4.9454    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.7329   -4.1608    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1809   -3.5477    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3739   -3.7192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1781   -3.1062    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6860   -3.7563    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9066   -2.7188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9354   -1.8943    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6062   -3.1560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3346   -2.7687    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0768   -2.3215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4752   -1.7084    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8838   -2.1500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4358   -2.7631    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668   -1.5229    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5399   -3.9893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7948   -3.2047    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0919   -4.6024    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  2  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 13 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 11 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 29 31  1  0  0  0  0
 31 32  2  0  0  0  0
 23 32  1  0  0  0  0
 26 32  1  0  0  0  0
 10 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0305440

> <DATABASE_NAME>
NP-MRD

> <SMILES>
NC1CCCC1C(=O)NC(C1CC(O)(C(O)CO)C(O)C(O1)N1C=NC2=CN=C(N)N=C12)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H29N7O8/c21-9-3-1-2-8(9)16(31)25-13(18(32)33)11-4-20(34,12(29)6-28)14(30)17(35-11)27-7-24-10-5-23-19(22)26-15(10)27/h5,7-9,11-14,17,28-30,34H,1-4,6,21H2,(H,25,31)(H,32,33)(H2,22,23,26)

> <INCHI_KEY>
BHAUQSKSOITMND-UHFFFAOYSA-N

> <FORMULA>
C20H29N7O8

> <MOLECULAR_WEIGHT>
495.493

> <EXACT_MASS>
495.207760922

> <JCHEM_ACCEPTOR_COUNT>
13

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
48.256486191574766

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[6-(2-amino-9H-purin-9-yl)-4-(1,2-dihydroxyethyl)-4,5-dihydroxyoxan-2-yl]-2-[(2-aminocyclopentyl)formamido]acetic acid

> <ALOGPS_LOGP>
-2.74

> <JCHEM_LOGP>
-5.877704248907682

> <ALOGPS_LOGS>
-1.87

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.064610105307661

> <JCHEM_PKA_STRONGEST_ACIDIC>
-0.8374197652744222

> <JCHEM_PKA_STRONGEST_BASIC>
9.400150484787675

> <JCHEM_POLAR_SURFACE_AREA>
252.19000000000003

> <JCHEM_REFRACTIVITY>
116.54329999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.64e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(2-aminocyclopentyl)formamido][6-(2-aminopurin-9-yl)-4-(1,2-dihydroxyethyl)-4,5-dihydroxyoxan-2-yl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  N   UNK     0       5.759 -13.086   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0       4.219 -13.086   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.313 -14.332   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.849 -13.856   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.849 -12.316   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.313 -11.841   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.789 -10.376   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       5.296 -10.056   0.000  0.00  0.00           O+0
HETATM    9  N   UNK     0       2.759  -9.231   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       3.235  -7.767   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.204  -6.622   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.698  -6.943   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.333  -5.798   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.281  -7.012   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -1.692  -5.075   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -1.746  -3.536   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -2.998  -5.891   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -4.358  -5.168   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       0.143  -4.334   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -0.887  -3.189   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       1.650  -4.013   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.680  -5.158   0.000  0.00  0.00           O+0
HETATM   23  N   UNK     0       2.126  -2.549   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM   25  N   UNK     0       2.126  -0.057   0.000  0.00  0.00           N+0
HETATM   26  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM   28  N   UNK     0       6.258  -0.533   0.000  0.00  0.00           N+0
HETATM   29  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM   30  N   UNK     0       7.591  -2.843   0.000  0.00  0.00           N+0
HETATM   31  N   UNK     0       4.924  -2.843   0.000  0.00  0.00           N+0
HETATM   32  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       4.741  -7.447   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       5.217  -5.982   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0       5.772  -8.591   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    2    7                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   33                                                  
CONECT   11   10   12   22                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15   19                                             
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17                                                            
CONECT   19   13   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   23                                                  
CONECT   22   21   11                                                       
CONECT   23   21   24   32                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   32                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   23   26                                                  
CONECT   33   10   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₉N₇O₈

Average Mass

495.4930 Da

Monoisotopic Mass

495.20776 Da

IUPAC Name

2-[6-(2-amino-9H-purin-9-yl)-4-(1,2-dihydroxyethyl)-4,5-dihydroxyoxan-2-yl]-2-[(2-aminocyclopentyl)formamido]acetic acid

Traditional Name

[(2-aminocyclopentyl)formamido][6-(2-aminopurin-9-yl)-4-(1,2-dihydroxyethyl)-4,5-dihydroxyoxan-2-yl]acetic acid

CAS Registry Number

Not Available

SMILES

NC1CCCC1C(=O)NC(C1CC(O)(C(O)CO)C(O)C(O1)N1C=NC2=CN=C(N)N=C12)C(O)=O

InChI Identifier

InChI=1S/C20H29N7O8/c21-9-3-1-2-8(9)16(31)25-13(18(32)33)11-4-20(34,12(29)6-28)14(30)17(35-11)27-7-24-10-5-23-19(22)26-15(10)27/h5,7-9,11-14,17,28-30,34H,1-4,6,21H2,(H,25,31)(H,32,33)(H2,22,23,26)

InChI Key

BHAUQSKSOITMND-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces novoguineensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Tricarboxylic acids and derivatives

Direct Parent

Tricarboxylic acids and derivatives

Alternative Parents

Substituents

Tricarboxylic acid or derivatives
Fatty acid ester
Gamma butyrolactone
Fatty acyl
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Tertiary alcohol
Lactone
Hemiacetal
Carboxylic acid ester
Organoheterocyclic compound
Oxacycle
Organic oxide
Organooxygen compound
Alcohol
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-2.7	ALOGPS
logP	-5.9	ChemAxon
logS	-1.9	ALOGPS
pKa (Strongest Acidic)	-0.84	ChemAxon
pKa (Strongest Basic)	9.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	13	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	252.19 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	116.54 m³·mol⁻¹	ChemAxon
Polarizability	48.26 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162956

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for {[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid (NP0305440)

MOL for NP0305440 ({[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid)

3D MOL for NP0305440 ({[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid)

3D SDF for NP0305440 ({[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid)

3D-SDF for NP0305440 ({[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid)

PDB for NP0305440 ({[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid)

3D PDB for NP0305440 ({[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid)

SMILES for NP0305440 ({[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid)

INCHI for NP0305440 ({[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid)

Structure for NP0305440 ({[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid)

3D Structure for NP0305440 ({[(2-aminocyclopentyl)(hydroxy)methylidene]amino}[4-(1,2-dihydroxyethyl)-4,5-dihydroxy-6-(2-imino-1h-purin-9-yl)oxan-2-yl]acetic acid)