NP-MRD: Showing NP-Card for methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate (NP0304969)

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Record Information

Version

2.0

Created at

2022-09-10 20:25:48 UTC

Updated at

2022-09-10 20:25:49 UTC

NP-MRD ID

NP0304969

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate

Description

Methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate belongs to the class of organic compounds known as styrenes. These are organic compounds containing an ethenylbenzene moiety. methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate is found in Mucidula mucida and Strobilurus tenacellus. Methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 37 37  0  0  0  0  0  0  0  0999 V2000
   -5.4948   -1.6732    0.0772 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7066   -0.5012   -0.1777 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3938   -0.6363   -0.6200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3754   -0.0854    0.0163 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6514    0.6735    1.2007 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8648    1.2710    1.9488 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0211    0.7652    1.5892 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3674    1.5074    2.7615 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0378   -0.2605   -0.4912 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9620   -1.0820   -1.7627 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0694    0.2062    0.0099 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4184    0.0254   -0.5065 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4711    0.5663    0.1130 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8326    0.4201   -0.3538 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8507    1.0274    0.3717 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1786    0.9498    0.0140 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5392    0.2406   -1.1152 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5578   -0.3742   -1.8587 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2195   -0.2762   -1.4684 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9683   -2.2491    0.8651 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5009   -1.4016    0.3872 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6046   -2.2825   -0.8627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2179   -1.2138   -1.5140 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4285    1.7554    2.6822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1071    0.9122    3.6521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7661    2.4448    2.7001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6227   -0.5050   -2.4834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3823   -2.0792   -1.5879 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0202   -1.0709   -2.2296 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0366    0.8092    0.9362 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6129   -0.5373   -1.3801 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2672    1.1388    1.0086 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6168    1.6039    1.2789 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9542    1.4346    0.5998 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5869    0.1773   -1.4006 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8378   -0.9326   -2.7470 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4767   -0.7680   -2.0708 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  1  0
 19 14  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
 10 27  1  0
 10 28  1  0
 10 29  1  0
 11 30  1  0
 12 31  1  0
 13 32  1  0
 15 33  1  0
 16 34  1  0
 17 35  1  0
 18 36  1  0
 19 37  1  0
  8 24  1  0
  8 25  1  0
  8 26  1  0
M  END


  Mrv1533004241500202D          

 19 19  0  0  0  0            999 V2000
   -2.1434    6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    5.7750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    5.7750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  4  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  4  0  0  0
  7  8  2  0  0  0  0
  8  9  1  4  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
  9 14  1  0  0  0  0
  5 15  1  0  0  0  0
  4 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0304969

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC=C(C(C)=CC=CC1=CC=CC=C1)C(=O)OC

> <INCHI_IDENTIFIER>
InChI=1S/C16H18O3/c1-13(15(12-18-2)16(17)19-3)8-7-11-14-9-5-4-6-10-14/h4-12H,1-3H3

> <INCHI_KEY>
JSCQSBGXKRTPHZ-UHFFFAOYSA-N

> <FORMULA>
C16H18O3

> <MOLECULAR_WEIGHT>
258.317

> <EXACT_MASS>
258.12559444

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
37

> <JCHEM_AVERAGE_POLARIZABILITY>
29.013036069776383

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate

> <ALOGPS_LOGP>
4.18

> <JCHEM_LOGP>
3.344436680666667

> <ALOGPS_LOGS>
-4.60

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.770133666253392

> <JCHEM_POLAR_SURFACE_AREA>
35.53

> <JCHEM_REFRACTIVITY>
78.16070000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.51e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 24-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-APR-15         0                                  
HETATM    1  C   UNK     0      -4.001  11.550   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -2.667  10.780   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -2.667   9.240   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334   8.470   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.667   6.160   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.000   9.240   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.334   8.470   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       0.000  10.780   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       1.334  11.550   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   16                                                  
CONECT    5    4    6   15                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13    9                                                       
CONECT   15    5                                                            
CONECT   16    4   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   38    0
END

View in JSmol

Synonyms

Value	Source
Methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoic acid	Generator

Chemical Formula

C₁₆H₁₈O₃

Average Mass

258.3170 Da

Monoisotopic Mass

258.12559 Da

IUPAC Name

methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate

Traditional Name

methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate

CAS Registry Number

Not Available

SMILES

COC=C(C(C)=CC=CC1=CC=CC=C1)C(=O)OC

InChI Identifier

InChI=1S/C16H18O3/c1-13(15(12-18-2)16(17)19-3)8-7-11-14-9-5-4-6-10-14/h4-12H,1-3H3

InChI Key

JSCQSBGXKRTPHZ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Mucidula mucida	LOTUS Database	35616633
Strobilurus tenacellus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as styrenes. These are organic compounds containing an ethenylbenzene moiety.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Styrenes

Direct Parent

Styrenes

Alternative Parents

Substituents

Styrene
Fatty acid ester
Fatty acyl
Vinylogous ester
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Methyl ester
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxide
Organooxygen compound
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.18	ALOGPS
logP	3.34	ChemAxon
logS	-4.6	ALOGPS
pKa (Strongest Basic)	-4.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	35.53 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	78.16 m³·mol⁻¹	ChemAxon
Polarizability	29.01 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

108019

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate (NP0304969)

MOL for NP0304969 (methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate)

3D MOL for NP0304969 (methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate)

3D SDF for NP0304969 (methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate)

3D-SDF for NP0304969 (methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate)

PDB for NP0304969 (methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate)

3D PDB for NP0304969 (methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate)

SMILES for NP0304969 (methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate)

INCHI for NP0304969 (methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate)

Structure for NP0304969 (methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate)

3D Structure for NP0304969 (methyl 2-(methoxymethylidene)-3-methyl-6-phenylhexa-3,5-dienoate)