NP-MRD: Showing NP-Card for (2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol (NP0304796)

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Record Information

Version

2.0

Created at

2022-09-10 20:08:34 UTC

Updated at

2022-09-10 20:08:35 UTC

NP-MRD ID

NP0304796

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Description

Myrmekioside B belongs to the class of organic compounds known as glycosylglycerols. These are glycerolipids structurally characterized by the presence of one or more sugar residues attached to glycerol via a glycosidic linkage. Based on a literature review very few articles have been published on Myrmekioside B.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102222082D          

 54 56  0  0  1  0            999 V2000
    5.0107  -13.4486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6732  -13.9403    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302  -13.6125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0927  -14.1042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8497  -13.7764    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5122  -14.2681    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2693  -13.9403    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3639  -13.1208    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9317  -14.4321    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6888  -14.1042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3512  -14.5960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1083  -14.2681    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7707  -14.7599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5278  -14.4321    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1902  -14.9238    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9473  -14.5960    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6097  -15.0877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3668  -14.7599    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.0292  -15.2516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.7863  -14.9238    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   17.8810  -14.1042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.2185  -13.6125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.3131  -12.7929    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   16.6507  -12.3012    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7453  -11.4817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5024  -11.1538    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   17.5970  -10.3343    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.1649  -11.6456    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   18.9219  -11.3177    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.0702  -12.4651    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   18.7327  -12.9569    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.4488  -15.4155    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.2058  -15.0877    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   19.3005  -14.2681    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.0575  -13.9403    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   20.1522  -13.1208    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.9092  -12.7929    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.7200  -14.4321    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   21.4770  -14.1042    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.6253  -15.2516    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   21.2878  -15.7433    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.8683  -15.5794    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   19.7736  -16.3990    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.4361  -16.8907    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   21.1931  -16.5629    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.8556  -17.0546    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   22.6127  -16.7268    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.7073  -15.9073    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.7609  -17.8742    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   22.4234  -18.3659    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.0039  -18.2020    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   20.9092  -19.0216    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.3414  -17.7103    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   19.5844  -18.0381    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 23 22  1  6  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 28 29  1  6  0  0  0
 28 30  1  0  0  0  0
 23 30  1  0  0  0  0
 30 31  1  1  0  0  0
 20 32  1  6  0  0  0
 33 32  1  6  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  6  0  0  0
 36 37  1  0  0  0  0
 35 38  1  0  0  0  0
 38 39  1  1  0  0  0
 38 40  1  0  0  0  0
 40 41  1  6  0  0  0
 40 42  1  0  0  0  0
 33 42  1  0  0  0  0
 42 43  1  1  0  0  0
 44 43  1  6  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  6  0  0  0
 47 48  1  0  0  0  0
 46 49  1  0  0  0  0
 49 50  1  1  0  0  0
 49 51  1  0  0  0  0
 51 52  1  6  0  0  0
 51 53  1  0  0  0  0
 44 53  1  0  0  0  0
 53 54  1  1  0  0  0
M  END

     RDKit          3D

124126  0  0  0  0  0  0  0  0999 V2000
   10.7057   -1.1897    0.9280 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.5535   -1.0152   -0.2640 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4370   -2.0782   -1.2695 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.2440   -2.3865   -2.0279 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.9521   -2.8031   -1.5452 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9934   -2.1045   -0.7189 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3665   -0.8321   -1.1521 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.3379    0.2700   -1.3917 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4207   -0.3097   -0.0487 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3147   -1.2404    0.2776 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3777   -1.5568   -0.8439 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6725   -0.3352   -1.3992 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8797    0.3031   -0.3025 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1482    1.5230   -0.7862 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1436    1.2124   -1.9033 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4944    2.5098   -2.2776 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2156    3.2304   -1.1978 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2823    2.7607   -0.5787 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3843    1.5876    0.0538 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7364    1.5105    0.8028 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6740    2.6442    1.8190 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8336    2.5401    2.5845 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9276    3.5312    3.5542 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8770    3.0146    4.8468 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8310    4.1160    5.7145 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2427    4.6678    5.7687 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3346    5.7298    6.6702 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6130    5.2010    4.4044 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.0127    5.2642    4.3542 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1550    4.3320    3.2842 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8819    5.1657    2.1750 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8060    0.2796    1.3845 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9961   -0.3964    1.0977 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.6344   -0.7833    2.2311 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9777   -2.1060    2.3149 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.6513   -2.4458    3.6325 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7733   -2.1628    4.6868 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6812   -2.8991    2.2838 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8711   -4.2362    2.6051 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1078   -2.7573    0.8863 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7290   -2.7833    0.8763 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6489   -1.5522    0.1794 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7616   -1.8811   -0.6140 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5103   -1.7064   -1.9722 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.4063   -0.7165   -2.3917 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3902   -0.5104   -3.7565 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.3824    0.5923   -4.0654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6380    0.1307   -3.6178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9069   -1.7723   -4.4554 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.9512   -1.5366   -5.8282 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9482   -2.8894   -4.1585 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.5177   -4.1078   -4.5858 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7071   -3.0047   -2.6767 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.5297   -3.7683   -2.5288 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.3308   -0.9263    1.8387 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.3866   -2.2513    1.0678 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7974   -0.5653    0.9403 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3823   -0.0208   -0.7778 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.6549   -0.8974    0.0653 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2508   -1.8171   -2.0674 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.9359   -3.0517   -0.8657 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1971   -1.6655   -2.9161 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5828   -3.3419   -2.6892 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1031   -3.8388   -0.9979 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.3255   -3.2414   -2.4516 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1580   -2.1304    0.4061 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0550   -2.8545   -0.7169 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6749   -0.9843   -2.0275 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4704    0.8521   -0.4256 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8568    0.9989   -2.1127 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3092    0.0237   -1.7772 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9726   -0.0449    0.8588 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9715    0.6581   -0.4143 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7823   -0.8369    1.1683 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7499   -2.2186    0.6340 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5718   -2.2280   -0.4438 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8457   -2.0676   -1.6808 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4618    0.3743   -1.7794 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0716   -0.6318   -2.2638 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1253   -0.4745    0.0257 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4795    0.5381    0.5920 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6507    1.9911    0.0941 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9038    2.2616   -1.1516 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5182    0.4056   -1.5700 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7840    0.9162   -2.7862 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1271    2.4067   -3.2141 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3456    3.1745   -2.6372 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5952    3.6069   -0.4622 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5307    4.2615   -1.6316 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5645    1.3696    0.7641 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4602    0.6932   -0.6217 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5882    1.7414    0.1567 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7760    3.6286    1.2740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7489    2.5777    2.4152 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0344    4.1786    3.4538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4408    3.8825    6.7054 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1950    4.8995    5.2101 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9162    3.8559    6.1153 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4584    5.4197    7.6066 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2608    6.2457    4.3301 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3929    4.3583    4.1430 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9616    3.6532    2.9371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9568    6.1122    2.3833 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6729    0.2570    0.4787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6182   -2.3915    1.4752 H   0  0  0  0  0  0  0  0  0  0  0  0
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 53123  1  1
 54124  1  0
M  END


  Mrv1652309102222082D          

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  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
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  6  7  1  0  0  0  0
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 44 53  1  0  0  0  0
 53 54  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0304796

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCC(C)CCCCCCCCCOC[C@H](CO[C@@H]1OC[C@@H](O)[C@H](O)[C@H]1O)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C37H70O17/c1-3-4-5-11-14-22(2)15-12-9-7-6-8-10-13-16-48-19-23(20-49-35-32(46)27(41)24(40)21-50-35)51-37-34(31(45)29(43)26(18-39)53-37)54-36-33(47)30(44)28(42)25(17-38)52-36/h22-47H,3-21H2,1-2H3/t22?,23-,24-,25-,26-,27+,28-,29-,30+,31+,32-,33-,34-,35-,36+,37-/m1/s1

> <INCHI_KEY>
QREQUCCAUCRAOW-HZKHAILCSA-N

> <FORMULA>
C37H70O17

> <MOLECULAR_WEIGHT>
786.95

> <EXACT_MASS>
786.461300794

> <JCHEM_ACCEPTOR_COUNT>
17

> <JCHEM_ATOM_COUNT>
124

> <JCHEM_AVERAGE_POLARIZABILITY>
87.5585059018097

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
10

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,3R,4S,5S,6R)-2-{[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2R)-1-[(10-methylhexadecyl)oxy]-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_LOGP>
1.0676825769999978

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.333263888144167

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.86180744090126

> <JCHEM_PKA_STRONGEST_BASIC>
-3.5265804040762276

> <JCHEM_POLAR_SURFACE_AREA>
266.90999999999997

> <JCHEM_REFRACTIVITY>
190.17890000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
26

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4S,5S,6R)-2-{[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2R)-1-[(10-methylhexadecyl)oxy]-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0       9.353 -25.104   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.590 -26.022   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      12.003 -25.410   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      13.240 -26.328   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      14.653 -25.716   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      15.889 -26.634   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      17.303 -26.022   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      17.479 -24.492   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      18.539 -26.940   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      19.952 -26.328   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      21.189 -27.246   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      22.602 -26.634   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      23.839 -27.552   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      25.252 -26.940   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      26.488 -27.858   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      27.902 -27.246   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      29.138 -28.164   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      30.551 -27.552   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      31.788 -28.470   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      33.201 -27.858   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      33.378 -26.328   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      32.141 -25.410   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      32.318 -23.880   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      31.081 -22.962   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      31.258 -21.432   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      32.671 -20.820   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      32.848 -19.291   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      33.908 -21.738   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      35.321 -21.126   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      33.731 -23.268   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      34.968 -24.186   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0      34.438 -28.776   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      35.851 -28.164   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      36.028 -26.634   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      37.441 -26.022   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      37.617 -24.492   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      39.031 -23.880   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0      38.677 -26.940   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      40.090 -26.328   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      38.501 -28.470   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      39.737 -29.388   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      37.087 -29.082   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      36.911 -30.611   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      38.147 -31.529   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      39.561 -30.917   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      40.797 -31.835   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      42.210 -31.223   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0      42.387 -29.694   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0      40.620 -33.365   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      41.857 -34.283   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0      39.207 -33.977   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0      39.031 -35.507   0.000  0.00  0.00           O+0
HETATM   53  C   UNK     0      37.971 -33.059   0.000  0.00  0.00           C+0
HETATM   54  O   UNK     0      36.557 -33.671   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   32                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   30                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   23   31                                                  
CONECT   31   30                                                            
CONECT   32   20   33                                                       
CONECT   33   32   34   42                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36   38                                                  
CONECT   36   35   37                                                       
CONECT   37   36                                                            
CONECT   38   35   39   40                                                  
CONECT   39   38                                                            
CONECT   40   38   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   33   43                                                  
CONECT   43   42   44                                                       
CONECT   44   43   45   53                                                  
CONECT   45   44   46                                                       
CONECT   46   45   47   49                                                  
CONECT   47   46   48                                                       
CONECT   48   47                                                            
CONECT   49   46   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49   52   53                                                  
CONECT   52   51                                                            
CONECT   53   51   44   54                                                  
CONECT   54   53                                                            
MASTER        0    0    0    0    0    0    0    0   54    0  112    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₇H₇₀O₁₇

Average Mass

786.9500 Da

Monoisotopic Mass

786.46130 Da

IUPAC Name

(2S,3R,4S,5S,6R)-2-{[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2R)-1-[(10-methylhexadecyl)oxy]-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

CAS Registry Number

Not Available

SMILES

CCCCCCC(C)CCCCCCCCCOC[C@H](CO[C@@H]1OC[C@@H](O)[C@H](O)[C@H]1O)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C37H70O17/c1-3-4-5-11-14-22(2)15-12-9-7-6-8-10-13-16-48-19-23(20-49-35-32(46)27(41)24(40)21-50-35)51-37-34(31(45)29(43)26(18-39)53-37)54-36-33(47)30(44)28(42)25(17-38)52-36/h22-47H,3-21H2,1-2H3/t22?,23-,24-,25-,26-,27+,28-,29-,30+,31+,32-,33-,34-,35-,36+,37-/m1/s1

InChI Key

QREQUCCAUCRAOW-HZKHAILCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as glycosylglycerols. These are glycerolipids structurally characterized by the presence of one or more sugar residues attached to glycerol via a glycosidic linkage.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerolipids

Sub Class

Glycosylglycerols

Direct Parent

Glycosylglycerols

Alternative Parents

Substituents

Glycosylglycerol
Disaccharide
Glycosyl compound
O-glycosyl compound
Glycerol ether
Oxane
Secondary alcohol
Polyol
Acetal
Organoheterocyclic compound
Oxacycle
Ether
Dialkyl ether
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Alcohol
Primary alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.07	ChemAxon
pKa (Strongest Acidic)	11.86	ChemAxon
pKa (Strongest Basic)	-3.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	17	ChemAxon
Hydrogen Donor Count	10	ChemAxon
Polar Surface Area	266.91 Å²	ChemAxon
Rotatable Bond Count	26	ChemAxon
Refractivity	190.18 m³·mol⁻¹	ChemAxon
Polarizability	87.56 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8570921

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10395481

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol (NP0304796)

MOL for NP0304796 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D MOL for NP0304796 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D SDF for NP0304796 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D-SDF for NP0304796 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

PDB for NP0304796 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D PDB for NP0304796 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

SMILES for NP0304796 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

INCHI for NP0304796 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

Structure for NP0304796 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)

3D Structure for NP0304796 ((2s,3r,4s,5s,6r)-2-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-2-{[(2r)-1-[(10-methylhexadecyl)oxy]-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}propan-2-yl]oxy}oxan-3-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol)