NP-MRD: Showing NP-Card for (1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate (NP0304290)

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Record Information

Version

2.0

Created at

2022-09-10 19:16:28 UTC

Updated at

2022-09-10 19:16:29 UTC

NP-MRD ID

NP0304290

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate

Description

4Alpha,14-Dimethyl-5alpha-ergosta-8,24-dien-3beta-ol acetate, also known as 4α,14-dimethyl-5α-ergosta-8,24-dien-3β-ol acetic acid, belongs to the class of organic compounds known as steroid esters. Steroid esters are compounds containing a steroid moiety which bears a carboxylic acid ester group. (1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate is found in Brassica napus. Based on a literature review very few articles have been published on 4alpha,14-Dimethyl-5alpha-ergosta-8,24-dien-3beta-ol acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102221162D          

 34 37  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309102221162D          

 34 37  0  0  1  0            999 V2000
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   -1.6810    2.6155    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1873    3.2668    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0046    3.1540    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3155    2.3898    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5109    3.8053    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3282    3.6924    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2000    4.5695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4672    2.1038    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1073    2.8462    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9990    2.7345    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8111    2.5893    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 14 13  1  6  0  0  0
  8 14  1  0  0  0  0
 14 15  1  0  0  0  0
  5 15  1  0  0  0  0
 15 16  1  1  0  0  0
 11 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  6  0  0  0
 22 23  1  1  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  2  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 21 31  1  0  0  0  0
 17 31  1  0  0  0  0
 31 32  1  6  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 10 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0304290

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](CCC(C)=C(C)C)[C@H]1CC[C@@]2(C)C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](OC(C)=O)[C@@H](C)[C@@H]1CC3

> <INCHI_IDENTIFIER>
InChI=1S/C32H52O2/c1-20(2)21(3)10-11-22(4)25-14-18-32(9)28-13-12-26-23(5)29(34-24(6)33)16-17-30(26,7)27(28)15-19-31(25,32)8/h22-23,25-26,29H,10-19H2,1-9H3/t22-,23+,25-,26+,29+,30+,31-,32+/m1/s1

> <INCHI_KEY>
PDEYWDRGPXAGPH-CFPCDSOASA-N

> <FORMULA>
C32H52O2

> <MOLECULAR_WEIGHT>
468.766

> <EXACT_MASS>
468.396730914

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
86

> <JCHEM_AVERAGE_POLARIZABILITY>
59.76542732786494

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,5S,6S,7S,11R,14R,15R)-14-[(2R)-5,6-dimethylhept-5-en-2-yl]-2,6,11,15-tetramethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-1(10)-en-5-yl acetate

> <JCHEM_LOGP>
8.013158352999998

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-7.003185421472154

> <JCHEM_POLAR_SURFACE_AREA>
26.3

> <JCHEM_REFRACTIVITY>
143.5801

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S,5S,6S,7S,11R,14R,15R)-14-[(2R)-5,6-dimethylhept-5-en-2-yl]-2,6,11,15-tetramethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadec-1(10)-en-5-yl acetate

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0      12.007   0.581   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.491   0.852   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       9.498  -0.325   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       9.968   2.301   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       8.452   2.572   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.929   4.020   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.413   4.291   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.420   3.114   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.897   4.562   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.904   3.385   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.911   2.208   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.434   0.759   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.950   0.488   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.943   1.666   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.459   1.394   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.982  -0.054   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.395   2.479   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.764   0.984   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.179   1.534   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.095   2.398   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -0.667   3.877   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -1.612   5.093   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -1.032   6.519   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -3.138   4.882   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -4.083   6.098   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -5.609   5.887   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -6.189   4.461   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -6.554   7.103   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -8.079   6.893   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -5.973   8.530   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       0.872   3.927   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       0.200   5.313   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       1.865   5.104   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       3.381   4.833   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   15                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10   14                                             
CONECT    9    8                                                            
CONECT   10    8   11   34                                                  
CONECT   11   10   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13    8   15                                                  
CONECT   15   14    5   16                                                  
CONECT   16   15                                                            
CONECT   17   11   18   19   31                                             
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   31                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31   21   17   32   33                                             
CONECT   32   31                                                            
CONECT   33   31   34                                                       
CONECT   34   33   10                                                       
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

View in JSmol

Synonyms

Value	Source
4a,14-Dimethyl-5a-ergosta-8,24-dien-3b-ol acetate	Generator
4a,14-Dimethyl-5a-ergosta-8,24-dien-3b-ol acetic acid	Generator
4alpha,14-Dimethyl-5alpha-ergosta-8,24-dien-3beta-ol acetic acid	Generator
4Α,14-dimethyl-5α-ergosta-8,24-dien-3β-ol acetate	Generator
4Α,14-dimethyl-5α-ergosta-8,24-dien-3β-ol acetic acid	Generator

Chemical Formula

C₃₂H₅₂O₂

Average Mass

468.7660 Da

Monoisotopic Mass

468.39673 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C[C@H](CCC(C)=C(C)C)[C@H]1CC[C@@]2(C)C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](OC(C)=O)[C@@H](C)[C@@H]1CC3

InChI Identifier

InChI=1S/C32H52O2/c1-20(2)21(3)10-11-22(4)25-14-18-32(9)28-13-12-26-23(5)29(34-24(6)33)16-17-30(26,7)27(28)15-19-31(25,32)8/h22-23,25-26,29H,10-19H2,1-9H3/t22-,23+,25-,26+,29+,30+,31-,32+/m1/s1

InChI Key

PDEYWDRGPXAGPH-CFPCDSOASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Brassica napus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroid esters. Steroid esters are compounds containing a steroid moiety which bears a carboxylic acid ester group.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid esters

Direct Parent

Steroid esters

Alternative Parents

Substituents

Steroid ester
14-alpha-methylsteroid
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101288367

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate (NP0304290)

MOL for NP0304290 ((1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate)

3D MOL for NP0304290 ((1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate)

3D SDF for NP0304290 ((1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate)

3D-SDF for NP0304290 ((1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate)

PDB for NP0304290 ((1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate)

3D PDB for NP0304290 ((1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate)

SMILES for NP0304290 ((1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate)

INCHI for NP0304290 ((1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate)

Structure for NP0304290 ((1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate)

3D Structure for NP0304290 ((1r,3ar,5as,6s,7s,9as,11ar)-1-[(2r)-5,6-dimethylhept-5-en-2-yl]-3a,6,9a,11a-tetramethyl-1h,2h,3h,4h,5h,5ah,6h,7h,8h,9h,10h,11h-cyclopenta[a]phenanthren-7-yl acetate)