NP-MRD: Showing NP-Card for [(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate (NP0303407)

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Record Information

Version

2.0

Created at

2022-09-10 17:43:52 UTC

Updated at

2022-09-10 17:43:52 UTC

NP-MRD ID

NP0303407

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate

Description

Rabdosin C, also known as rabdophyllin g, belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety. [(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate is found in Isodon henryi, Isodon japonicus and Isodon longitubus. [(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate was first documented in 1982 (PMID: 7168323). Based on a literature review very few articles have been published on Rabdosin C (PMID: 2937573).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102219432D          

 29 32  0  0  1  0            999 V2000
   -1.5987   -0.3788    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7854   -0.2403    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1637   -0.8483    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3012   -1.6618    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6469   -0.4671    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1725    0.0666    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4028    0.5335    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1586    1.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0038    1.0309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5595    1.6407    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2474    0.1857    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0661   -0.0115    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5936    0.6647    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9430    1.4121    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4705    2.0884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8199    2.8357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6485    2.0173    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3132   -0.7987    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1184   -0.9782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6765   -0.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4294    0.4164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4664    1.2406    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2475    0.5231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6242    0.5960    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3771    1.3831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9352    1.9907    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7596   -1.4229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9506   -1.2543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4166   -1.8832    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  1  0  0  0
  7  6  1  1  0  0  0
  2  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11  5  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
 12 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 21 24  1  0  0  0  0
 12 24  1  0  0  0  0
 24 25  1  6  0  0  0
 25 26  1  0  0  0  0
 18 27  1  6  0  0  0
 27 28  1  0  0  0  0
  5 28  1  0  0  0  0
 28 29  2  0  0  0  0
M  END

     RDKit          3D

 59 62  0  0  0  0  0  0  0  0999 V2000
   -4.4225    2.6390   -2.0743 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4066    1.8917   -1.8091 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3532    2.1224   -0.8540 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3748    2.8494    0.1936 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1178    1.3286   -1.2870 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5440    0.9019   -2.6517 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0284    0.5940   -2.3982 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1449   -0.3811   -1.2450 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7505   -0.9616   -0.9082 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0199   -1.8680    0.1169 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8535    0.1643   -0.3976 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4498   -0.1753    0.1036 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3111   -0.2763    1.6464 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1975    0.9863    2.0401 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4674    1.3126    3.3572 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9980    2.6657    3.6542 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2506    0.4501    4.2341 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4257    0.9888   -0.0965 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4820    1.0178    1.0073 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2585   -0.2279    0.8767 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6252   -1.4218    0.2985 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5699   -1.9321   -0.8171 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6984   -2.5283    1.3663 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2672   -1.3228   -0.3339 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7269   -2.6997   -0.4132 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7775   -3.5780   -0.8474 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8607    2.2266   -0.3080 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0829    2.3814   -1.2779 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1563    3.3037   -2.1360 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5992    3.5821   -1.5719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1512    2.3515   -2.8203 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5793    1.7652   -3.3710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0162    0.0676   -3.1004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5606    0.3110   -3.2864 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7399   -1.2396   -1.6234 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6487    0.0021   -0.3606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4866   -1.3751   -1.8604 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7230   -1.5495    0.7109 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5068    0.4594    0.5127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4809   -1.0128    1.8951 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -0.4630    2.1772 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3764    3.1422    2.7379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8553    2.6268    4.3666 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2030    3.3458    4.0614 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1072    0.7893   -0.9895 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1047    1.9263    0.7102 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1102    1.3088    1.9842 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6624   -0.4317    1.9199 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2273    0.0370    0.3441 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4595   -1.2427   -0.9232 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0907   -1.9101   -1.8024 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9931   -2.9095   -0.6069 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4136   -2.2228    2.1950 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7616   -2.7418    1.8592 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1909   -3.4533    0.9855 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4790   -1.0648   -1.4305 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3663   -3.1656    0.4934 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0667   -2.9053   -1.3095 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4019   -4.4789   -0.9364 H   0  0  0  0  0  0  0  0  0  0  0  0
 16 15  1  0
 15 17  2  0
 15 14  1  0
 14 13  1  0
 12 13  1  1
 12 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 21 23  1  0
 21 24  1  0
 24 25  1  0
 25 26  1  0
 18 27  1  0
 27 28  1  0
 28 29  2  0
  5 28  1  6
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
  7  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  2  0
 24 12  1  0
 11  5  1  0
 11 12  1  0
  3  5  1  0
 16 42  1  0
 16 43  1  0
 16 44  1  0
 13 40  1  0
 13 41  1  0
 18 45  1  6
 19 46  1  0
 19 47  1  0
 20 48  1  0
 20 49  1  0
 22 50  1  0
 22 51  1  0
 22 52  1  0
 23 53  1  0
 23 54  1  0
 23 55  1  0
 24 56  1  6
 25 57  1  0
 25 58  1  0
 26 59  1  0
  6 32  1  0
  6 33  1  0
  7 34  1  6
  8 35  1  0
  8 36  1  0
  9 37  1  6
 10 38  1  0
 11 39  1  1
  1 30  1  0
  1 31  1  0
M  END


  Mrv1652309102219432D          

 29 32  0  0  1  0            999 V2000
   -1.5987   -0.3788    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7854   -0.2403    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1637   -0.8483    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3012   -1.6618    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6469   -0.4671    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1725    0.0666    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4028    0.5335    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1586    1.1914    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0038    1.0309    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5595    1.6407    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2474    0.1857    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0661   -0.0115    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5936    0.6647    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9430    1.4121    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4705    2.0884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8199    2.8357    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6485    2.0173    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3132   -0.7987    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1184   -0.9782    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6765   -0.3707    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4294    0.4164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4664    1.2406    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2475    0.5231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6242    0.5960    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3771    1.3831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9352    1.9907    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7596   -1.4229    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9506   -1.2543    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4166   -1.8832    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  1  0  0  0
  7  6  1  1  0  0  0
  2  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11  5  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
 12 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 21 24  1  0  0  0  0
 12 24  1  0  0  0  0
 24 25  1  6  0  0  0
 25 26  1  0  0  0  0
 18 27  1  6  0  0  0
 27 28  1  0  0  0  0
  5 28  1  0  0  0  0
 28 29  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0303407

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)OC[C@@]12[C@H](CCC(C)(C)[C@H]1CO)OC(=O)[C@@]13C[C@@H](C[C@H](O)[C@@H]21)C(=C)C3=O

> <INCHI_IDENTIFIER>
InChI=1S/C22H30O7/c1-11-13-7-14(25)17-21(8-13,18(11)26)19(27)29-16-5-6-20(3,4)15(9-23)22(16,17)10-28-12(2)24/h13-17,23,25H,1,5-10H2,2-4H3/t13-,14+,15-,16+,17-,21+,22+/m1/s1

> <INCHI_KEY>
OCELUFZNLBUKGF-MVVUPFSZSA-N

> <FORMULA>
C22H30O7

> <MOLECULAR_WEIGHT>
406.475

> <EXACT_MASS>
406.199153306

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
59

> <JCHEM_AVERAGE_POLARIZABILITY>
42.249269375097285

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[(1S,4S,8R,9R,10S,11S,13S)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-9-yl]methyl acetate

> <JCHEM_LOGP>
1.042732297333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.529573474965844

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.746229331861844

> <JCHEM_PKA_STRONGEST_BASIC>
-2.611552643377725

> <JCHEM_POLAR_SURFACE_AREA>
110.13

> <JCHEM_REFRACTIVITY>
102.3045

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
[(1S,4S,8R,9R,10S,11S,13S)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-9-yl]methyl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.984  -0.707   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.466  -0.449   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.306  -1.583   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -0.562  -3.102   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.208  -0.872   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.322   0.124   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.752   0.996   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.296   2.224   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.874   1.924   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.911   3.063   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       2.328   0.347   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.857  -0.022   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.975   1.241   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       3.627   2.636   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       2.745   3.898   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.397   5.293   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.211   3.766   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       4.318  -1.491   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.821  -1.826   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.863  -0.692   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.402   0.777   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.471   2.316   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       7.929   0.976   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       4.899   1.113   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.437   2.582   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       5.479   3.716   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       3.285  -2.656   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       1.774  -2.341   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       0.778  -3.515   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   11   28                                             
CONECT    6    5    7                                                       
CONECT    7    6    2    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9    5   12                                                  
CONECT   12   11   13   18   24                                             
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   12   19   27                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23   24                                             
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   21   12   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25                                                            
CONECT   27   18   28                                                       
CONECT   28   27    5   29                                                  
CONECT   29   28                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   64    0
END

View in JSmol

Synonyms

Value	Source
Rabdophyllin g	MeSH

Chemical Formula

C₂₂H₃₀O₇

Average Mass

406.4750 Da

Monoisotopic Mass

406.19915 Da

IUPAC Name

[(1S,4S,8R,9R,10S,11S,13S)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0^{1,10}.0^{4,9}]hexadecan-9-yl]methyl acetate

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC(=O)OC[C@@]12[C@H](CCC(C)(C)[C@H]1CO)OC(=O)[C@@]13C[C@@H](C[C@H](O)[C@@H]21)C(=C)C3=O

InChI Identifier

InChI=1S/C22H30O7/c1-11-13-7-14(25)17-21(8-13,18(11)26)19(27)29-16-5-6-20(3,4)15(9-23)22(16,17)10-28-12(2)24/h13-17,23,25H,1,5-10H2,2-4H3/t13-,14+,15-,16+,17-,21+,22+/m1/s1

InChI Key

OCELUFZNLBUKGF-MVVUPFSZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Isodon henryi	LOTUS Database	35616633
Isodon japonicus	LOTUS Database	35616633
Isodon longitubus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpene lactones. These are diterpenoids containing a lactone moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Diterpene lactones

Alternative Parents

Substituents

Kaurane diterpenoid
Diterpenoid
Diterpene lactone
Delta_valerolactone
Delta valerolactone
Oxane
Dicarboxylic acid or derivatives
Cyclic alcohol
Secondary alcohol
Lactone
Ketone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.04	ChemAxon
pKa (Strongest Acidic)	14.75	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	110.13 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	102.3 m³·mol⁻¹	ChemAxon
Polarizability	42.25 Å³	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00031897

Chemspider ID

21468831

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

51346130

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Chen ZY: [Antineoplastic action of lasiokaurin and rabdosin C]. Zhong Yao Tong Bao. 1985 Aug;10(8):38-40. [PubMed:2937573 ]
Liu CJ, Li JC, An XZ, Cheng RM, Shen FZ, Xu YL, Wang DZ: [Studies on the antitumor diterpenoid constituents of Rabdosia japonica (Burm. f) Hara II. The structures of Rabdosin C]. Yao Xue Xue Bao. 1982 Oct;17(10):750-4. [PubMed:7168323 ]
LOTUS database [Link]

Showing NP-Card for [(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate (NP0303407)

MOL for NP0303407 ([(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate)

3D MOL for NP0303407 ([(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate)

3D SDF for NP0303407 ([(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate)

3D-SDF for NP0303407 ([(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate)

PDB for NP0303407 ([(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate)

3D PDB for NP0303407 ([(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate)

SMILES for NP0303407 ([(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate)

INCHI for NP0303407 ([(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate)

Structure for NP0303407 ([(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate)

3D Structure for NP0303407 ([(1s,4s,8r,9r,10s,11s,13s)-11-hydroxy-8-(hydroxymethyl)-7,7-dimethyl-14-methylidene-2,15-dioxo-3-oxatetracyclo[11.2.1.0¹,¹⁰.0⁴,⁹]hexadecan-9-yl]methyl acetate)