NP-MRD: Showing NP-Card for ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate (NP0302920)

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Record Information

Version

2.0

Created at

2022-09-10 16:48:34 UTC

Updated at

2022-09-10 16:48:34 UTC

NP-MRD ID

NP0302920

Secondary Accession Numbers

None

Natural Product Identification

Common Name

ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate

Description

Ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]Hexadec-6-ene-4-carboxylate belongs to the class of organic compounds known as androstane steroids. These are steroids with a structure based on the 19-carbon androstane skeleton. ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate is found in Haliclona oculata. Ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]Hexadec-6-ene-4-carboxylate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv0541 04121514302D          

 35 38  0  0  0  0            999 V2000
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M  END

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M  END


  Mrv0541 04121514302D          

 35 38  0  0  0  0            999 V2000
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    4.9466    0.0250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4622    0.6691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1622    1.4376    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3467    1.5621    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6778    2.0817    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4934    1.9572    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3778    2.8502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 14 19  1  0  0  0  0
 19 20  1  0  0  0  0
 11 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  2  0  0  0  0
  9 24  1  0  0  0  0
 24 25  1  0  0  0  0
  6 25  1  0  0  0  0
 25 26  2  0  0  0  0
 16 27  1  0  0  0  0
 27 28  1  0  0  0  0
 29 27  1  4  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0302920

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCOC(=O)C1(O)CC2(C)C3CCC4(C)C(CCC4C3C(O)C=C2C1=O)C(C)C=CC(C)C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C30H46O5/c1-8-35-27(33)30(34)16-29(7)22-13-14-28(6)20(19(5)10-9-18(4)17(2)3)11-12-21(28)25(22)24(31)15-23(29)26(30)32/h9-10,15,17-22,24-25,31,34H,8,11-14,16H2,1-7H3

> <INCHI_KEY>
KPTYNXILHJRUSA-UHFFFAOYSA-N

> <FORMULA>
C30H46O5

> <MOLECULAR_WEIGHT>
486.693

> <EXACT_MASS>
486.334524581

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
81

> <JCHEM_AVERAGE_POLARIZABILITY>
57.20338261621661

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate

> <ALOGPS_LOGP>
4.81

> <JCHEM_LOGP>
5.649951399000001

> <ALOGPS_LOGS>
-5.92

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.50079550127051

> <JCHEM_PKA_STRONGEST_ACIDIC>
10.650098640452288

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0186693549636656

> <JCHEM_POLAR_SURFACE_AREA>
83.83000000000001

> <JCHEM_REFRACTIVITY>
139.3523

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
5.87e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 12-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   12-APR-15         0                                  
HETATM    1  C   UNK     0       0.494   2.179   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.337   0.882   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       0.370  -0.486   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      -0.462  -1.782   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -2.000  -1.710   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.245  -3.150   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -1.190  -3.710   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.532  -2.304   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.734  -3.267   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.124  -1.777   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.254  -3.017   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.797  -1.576   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.317  -1.327   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       7.293  -2.518   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.984  -1.142   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.831  -2.590   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.238  -4.075   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.951  -4.921   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.749  -3.959   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.230  -4.208   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.686  -5.649   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       5.662  -6.841   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       3.166  -5.899   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.190  -4.707   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.652  -4.636   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -0.310  -5.838   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       9.794  -1.388   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      11.316  -1.620   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       9.234   0.047   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      10.196   1.249   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       9.636   2.684   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       8.114   2.916   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      10.599   3.886   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      12.121   3.653   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      10.039   5.320   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7    8   25                                             
CONECT    7    6                                                            
CONECT    8    6    9                                                       
CONECT    9    8   10   11   24                                             
CONECT   10    9                                                            
CONECT   11    9   12   20                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16   19                                             
CONECT   15   14                                                            
CONECT   16   14   17   27                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   14   20                                                  
CONECT   20   19   11   21                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23    9   25                                                  
CONECT   25   24    6   26                                                  
CONECT   26   25                                                            
CONECT   27   16   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

View in JSmol

Synonyms

Value	Source
Ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0,.0,]hexadec-6-ene-4-carboxylic acid	Generator
Ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylic acid	Generator

Chemical Formula

C₃₀H₄₆O₅

Average Mass

486.6930 Da

Monoisotopic Mass

486.33452 Da

IUPAC Name

ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate

Traditional Name

ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate

CAS Registry Number

Not Available

SMILES

CCOC(=O)C1(O)CC2(C)C3CCC4(C)C(CCC4C3C(O)C=C2C1=O)C(C)C=CC(C)C(C)C

InChI Identifier

InChI=1S/C30H46O5/c1-8-35-27(33)30(34)16-29(7)22-13-14-28(6)20(19(5)10-9-18(4)17(2)3)11-12-21(28)25(22)24(31)15-23(29)26(30)32/h9-10,15,17-22,24-25,31,34H,8,11-14,16H2,1-7H3

InChI Key

KPTYNXILHJRUSA-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Haliclona oculata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as androstane steroids. These are steroids with a structure based on the 19-carbon androstane skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Androstane steroids

Direct Parent

Androstane steroids

Alternative Parents

Substituents

Androstane-skeleton
Acyloin
Cyclic alcohol
Tertiary alcohol
Carboxylic acid ester
Ketone
Secondary alcohol
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Organic oxide
Organooxygen compound
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.81	ALOGPS
logP	5.65	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	10.65	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	139.35 m³·mol⁻¹	ChemAxon
Polarizability	57.2 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73238354

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate (NP0302920)

MOL for NP0302920 (ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate)

3D MOL for NP0302920 (ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate)

3D SDF for NP0302920 (ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate)

3D-SDF for NP0302920 (ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate)

PDB for NP0302920 (ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate)

3D PDB for NP0302920 (ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate)

SMILES for NP0302920 (ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate)

INCHI for NP0302920 (ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate)

Structure for NP0302920 (ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate)

3D Structure for NP0302920 (ethyl 13-(5,6-dimethylhept-3-en-2-yl)-4,8-dihydroxy-2,14-dimethyl-5-oxotetracyclo[7.7.0.0²,⁶.0¹⁰,¹⁴]hexadec-6-ene-4-carboxylate)