NP-MRD: Showing NP-Card for (2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid (NP0302711)

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Record Information

Version

2.0

Created at

2022-09-10 16:28:29 UTC

Updated at

2022-09-10 16:28:29 UTC

NP-MRD ID

NP0302711

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid

Description

(2S)-N-[(3R,4S,7S,10Z)-7-benzyl-5,8-dihydroxy-3-(propan-2-yl)-2-oxa-6,9-diazabicyclo[10.2.2]Hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2S)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone. (2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid is found in Scutia buxifolia. Based on a literature review very few articles have been published on (2S)-N-[(3R,4S,7S,10Z)-7-benzyl-5,8-dihydroxy-3-(propan-2-yl)-2-oxa-6,9-diazabicyclo[10.2.2]Hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2S)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102218282D          

 48 52  0  0  1  0            999 V2000
    8.8929    4.4186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4815    3.8404    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.2751    3.0417    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.8636    2.4635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6586    2.6842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8650    3.4829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6599    3.7035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2485    3.1254    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0420    2.3266    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2471    2.1060    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4801    2.8210    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2737    2.0223    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8916    3.3992    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.0133    4.2151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2750    4.5831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6968    3.9946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
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M  END

     RDKit          3D

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 16 65  1  0
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 17 67  1  1
 19 68  1  0
 21 69  1  6
 45 86  1  6
 40 83  1  0
 39 82  1  0
 43 85  1  0
 42 84  1  0
 37 81  1  0
 36 80  1  0
 34 79  1  0
 25 71  1  1
 26 72  1  0
 26 73  1  0
 28 74  1  0
 29 75  1  0
 30 76  1  0
 31 77  1  0
 32 78  1  0
 23 70  1  0
 46 87  1  0
 47 88  1  0
 47 89  1  0
 47 90  1  0
 48 91  1  0
 48 92  1  0
 48 93  1  0
M  END


  Mrv1652309102218282D          

 48 52  0  0  1  0            999 V2000
    8.8929    4.4186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.4815    3.8404    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    9.2751    3.0417    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.8636    2.4635    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6586    2.6842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8650    3.4829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.6599    3.7035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2485    3.1254    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0420    2.3266    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2471    2.1060    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4801    2.8210    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2737    2.0223    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8916    3.3992    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.0133    4.2151    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2750    4.5831    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6968    3.9946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0779    3.2629    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.7099    2.5245    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1654    1.8366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8865    2.4739    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.5185    1.7355    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.1661    1.1574    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8487    1.6207    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4601    0.3535    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3707   -0.4747    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.1515   -0.7413    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7727   -0.1984    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6132    0.6110    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.2344    1.1539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0152    0.8873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1747    0.0779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5535   -0.4650    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9353   -1.1839    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5261   -1.7598    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2363   -1.6380    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4027   -1.7479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5903   -1.5081    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0561   -0.8241    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4112   -0.2783    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5591    0.5373    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3191    0.8947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9309    0.3445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8114   -0.4698    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8871    1.5494    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6694    1.9040    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5748    2.7235    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2372    3.2152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8177    3.0514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  5 10  1  0  0  0  0
  3 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 13 17  1  0  0  0  0
 17 18  1  6  0  0  0
 18 19  1  4  0  0  0
 18 20  2  0  0  0  0
 21 20  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  4  0  0  0
 22 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  1  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 27 32  1  0  0  0  0
 25 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  2  0  0  0  0
 35 36  1  4  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 41 42  1  0  0  0  0
 42 43  2  0  0  0  0
 38 43  1  0  0  0  0
 41 44  1  0  0  0  0
 44 45  1  0  0  0  0
 21 45  1  0  0  0  0
 45 46  1  6  0  0  0
 46 47  1  0  0  0  0
 46 48  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0302711

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CN[C@@H](CC1=CC=CC=C1)C(=O)N1CCC[C@H]1C(O)=N[C@H]1[C@H](OC2=CC=C(C=C2)\C=C/N=C(O)[C@H](CC2=CC=CC=C2)N=C1O)C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C38H45N5O5/c1-25(2)34-33(42-36(45)32-15-10-22-43(32)38(47)31(39-3)24-28-13-8-5-9-14-28)37(46)41-30(23-27-11-6-4-7-12-27)35(44)40-21-20-26-16-18-29(48-34)19-17-26/h4-9,11-14,16-21,25,30-34,39H,10,15,22-24H2,1-3H3,(H,40,44)(H,41,46)(H,42,45)/b21-20-/t30-,31-,32-,33-,34+/m0/s1

> <INCHI_KEY>
OKWFLKIFQAURIN-KHQNRDSOSA-N

> <FORMULA>
C38H45N5O5

> <MOLECULAR_WEIGHT>
651.808

> <EXACT_MASS>
651.342069569

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
93

> <JCHEM_AVERAGE_POLARIZABILITY>
68.31050059519143

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S)-N-[(3R,4S,7S,10Z)-7-benzyl-5,8-dihydroxy-3-(propan-2-yl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2S)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid

> <JCHEM_LOGP>
-1.3268080515689298

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
-4.5693087503091165

> <JCHEM_PKA_STRONGEST_ACIDIC>
-8.727261425634083

> <JCHEM_PKA_STRONGEST_BASIC>
14.982372611875997

> <JCHEM_POLAR_SURFACE_AREA>
139.34

> <JCHEM_REFRACTIVITY>
184.9959

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(2S)-N-[(3R,4S,7S,10Z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2S)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0      16.600   8.248   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0      17.699   7.169   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0      17.313   5.678   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      18.412   4.599   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      19.896   5.010   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      20.281   6.501   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      21.765   6.913   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      22.864   5.834   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      22.478   4.343   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      20.995   3.931   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      15.830   5.266   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      15.444   3.775   0.000  0.00  0.00           O+0
HETATM   13  N   UNK     0      14.731   6.345   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0      14.958   7.868   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.580   8.555   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.501   7.457   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.212   6.091   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      12.525   4.712   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      13.375   3.428   0.000  0.00  0.00           O+0
HETATM   20  N   UNK     0      10.988   4.618   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0      10.301   3.240   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      11.510   2.160   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      12.784   3.025   0.000  0.00  0.00           O+0
HETATM   24  N   UNK     0      12.059   0.660   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0      11.892  -0.886   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      13.349  -1.384   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      14.509  -0.370   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      14.211   1.141   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      15.371   2.154   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      16.828   1.656   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      17.126   0.145   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      15.966  -0.868   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      11.079  -2.210   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      12.182  -3.285   0.000  0.00  0.00           O+0
HETATM   35  N   UNK     0       9.775  -3.058   0.000  0.00  0.00           N+0
HETATM   36  C   UNK     0       8.218  -3.263   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       6.702  -2.815   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       5.705  -1.538   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       4.501  -0.520   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       4.777   1.003   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       6.196   1.670   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       7.338   0.643   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       7.115  -0.877   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0       7.256   2.892   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0       8.716   3.554   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       8.540   5.084   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       9.776   6.002   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0       7.126   5.696   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   11                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   10                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9    5                                                       
CONECT   11    3   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   17                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   13   18                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22   45                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26   33                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   32                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   27                                                       
CONECT   33   25   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39   43                                                  
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42   44                                                  
CONECT   42   41   43                                                       
CONECT   43   42   38                                                       
CONECT   44   41   45                                                       
CONECT   45   44   21   46                                                  
CONECT   46   45   47   48                                                  
CONECT   47   46                                                            
CONECT   48   46                                                            
MASTER        0    0    0    0    0    0    0    0   48    0  104    0
END

View in JSmol

Synonyms

Value	Source
(2S)-N-[(3R,4S,7S,10Z)-7-Benzyl-5,8-dihydroxy-3-(propan-2-yl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2S)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidate	Generator

Chemical Formula

C₃₈H₄₅N₅O₅

Average Mass

651.8080 Da

Monoisotopic Mass

651.34207 Da

IUPAC Name

(2S)-N-[(3R,4S,7S,10Z)-7-benzyl-5,8-dihydroxy-3-(propan-2-yl)-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2S)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid

Traditional Name

(2S)-N-[(3R,4S,7S,10Z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2S)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid

CAS Registry Number

Not Available

SMILES

CN[C@@H](CC1=CC=CC=C1)C(=O)N1CCC[C@H]1C(O)=N[C@H]1[C@H](OC2=CC=C(C=C2)\C=C/N=C(O)[C@H](CC2=CC=CC=C2)N=C1O)C(C)C

InChI Identifier

InChI=1S/C38H45N5O5/c1-25(2)34-33(42-36(45)32-15-10-22-43(32)38(47)31(39-3)24-28-13-8-5-9-14-28)37(46)41-30(23-27-11-6-4-7-12-27)35(44)40-21-20-26-16-18-29(48-34)19-17-26/h4-9,11-14,16-21,25,30-34,39H,10,15,22-24H2,1-3H3,(H,40,44)(H,41,46)(H,42,45)/b21-20-/t30-,31-,32-,33-,34+/m0/s1

InChI Key

OKWFLKIFQAURIN-KHQNRDSOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Scutia buxifolia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic peptides. Cyclic peptides are compounds containing a cyclic moiety bearing a peptide backbone.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Cyclic peptides

Alternative Parents

Substituents

Cyclic alpha peptide
Alpha-amino acid amide
Alpha-amino acid or derivatives
Amphetamine or derivatives
N-acylpyrrolidine
Alkyl aryl ether
Aralkylamine
Monocyclic benzene moiety
Benzenoid
Cyclic carboximidic acid
Pyrrolidine
Tertiary carboxylic acid amide
Amino acid or derivatives
Carboxamide group
Secondary amine
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Carboximidic acid
Organoheterocyclic compound
Ether
Secondary aliphatic amine
Azacycle
Oxacycle
Carboximidic acid derivative
Organic nitrogen compound
Organonitrogen compound
Carbonyl group
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Amine
Organopnictogen compound
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.3	ChemAxon
pKa (Strongest Acidic)	-8.7	ChemAxon
pKa (Strongest Basic)	14.98	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	139.34 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	185 m³·mol⁻¹	ChemAxon
Polarizability	68.31 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163193919

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid (NP0302711)

MOL for NP0302711 ((2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid)

3D MOL for NP0302711 ((2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid)

3D SDF for NP0302711 ((2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid)

3D-SDF for NP0302711 ((2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid)

PDB for NP0302711 ((2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid)

3D PDB for NP0302711 ((2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid)

SMILES for NP0302711 ((2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid)

INCHI for NP0302711 ((2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid)

Structure for NP0302711 ((2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid)

3D Structure for NP0302711 ((2s)-n-[(3r,4s,7s,10z)-7-benzyl-5,8-dihydroxy-3-isopropyl-2-oxa-6,9-diazabicyclo[10.2.2]hexadeca-1(14),5,8,10,12,15-hexaen-4-yl]-1-[(2s)-2-(methylamino)-3-phenylpropanoyl]pyrrolidine-2-carboximidic acid)