NP-MRD: Showing NP-Card for 4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol (NP0302349)

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Record Information

Version

2.0

Created at

2022-09-10 15:50:37 UTC

Updated at

2022-09-10 15:50:37 UTC

NP-MRD ID

NP0302349

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol

Description

Anolignan C belongs to the class of organic compounds known as 7,7'-epoxylignans. These are lignans with a structure based on a 2,5-diaryl-3, 4-dimethyltetrahydrofuran skeleton. 4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol was first documented in 2020 (PMID: 32879651). Based on a literature review very few articles have been published on Anolignan C.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 41 43  0  0  0  0  0  0  0  0999 V2000
    1.4867   -2.2635    0.4495 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6425   -1.6446   -0.6207 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0321   -0.2251   -0.9504 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3263    0.1824   -0.3777 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4738    0.4834    0.9579 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7226    0.8657    1.4601 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8326    0.9533    0.6477 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0777    1.3356    1.1540 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6789    0.6508   -0.6887 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4335    0.2704   -1.1849 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0203    0.5819   -0.4881 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1186   -0.1516   -0.8739 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4173    0.4083   -0.5428 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4260    0.4058   -1.4848 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6843    0.9172   -1.2530 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9684    1.4639   -0.0210 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2419    1.9721    0.1882 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9755    1.4757    0.9321 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7049    0.9536    0.6820 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8138   -1.4991   -0.2681 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0453   -1.5557    1.2015 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5652   -3.3626    0.3656 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2108   -1.9377    1.4696 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5382   -1.8859    0.2837 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6765   -2.2380   -1.5746 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0121   -0.0753   -2.0704 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6214    0.4203    1.5993 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8451    1.1038    2.5101 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3627    2.3166    1.1790 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5500    0.7212   -1.3176 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3745    0.0467   -2.2344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0159   -0.2960   -1.9902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2397   -0.0154   -2.4644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4641    0.8970   -2.0312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3715    2.9573   -0.0453 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2225    1.9089    1.8880 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9760    0.9976    1.4765 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4562   -2.2359   -0.7616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1247   -1.5057    1.4640 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7205   -2.5719    1.5469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4558   -0.8255    1.7879 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2 20  1  0
 20 21  1  0
 20 12  1  0
 12 11  1  0
 11  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 16 18  1  0
 18 19  2  0
  3  2  1  0
 10  4  1  0
 19 13  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  2 25  1  6
 20 38  1  6
 21 39  1  0
 21 40  1  0
 21 41  1  0
 12 32  1  6
  3 26  1  6
  5 27  1  0
  6 28  1  0
  8 29  1  0
  9 30  1  0
 10 31  1  0
 14 33  1  0
 15 34  1  0
 17 35  1  0
 18 36  1  0
 19 37  1  0
M  END


  Mrv1652309102217502D          

 21 23  0  0  1  0            999 V2000
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3819   -1.7224    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1665   -1.4675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3381   -0.6605    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1227   -0.4056    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7358   -0.9576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5204   -0.7027    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5642   -1.7646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7796   -2.0195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -2.5070    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -2.5070    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1830   -3.1745    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1526   -3.9282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3323   -4.5956    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1528   -4.5094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6377   -5.1768    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4884   -3.7557    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0034   -3.0882    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0470   -1.7224    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7376   -1.4675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  6  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
  4 10  1  0  0  0  0
  3 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  2  0  0  0  0
 13 19  1  0  0  0  0
 12 20  1  0  0  0  0
  2 20  1  0  0  0  0
 20 21  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0302349

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@@H](C)[C@H](O[C@H]1C1=CC=C(O)C=C1)C1=CC=C(O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C18H20O3/c1-11-12(2)18(14-5-9-16(20)10-6-14)21-17(11)13-3-7-15(19)8-4-13/h3-12,17-20H,1-2H3/t11-,12+,17+,18-

> <INCHI_KEY>
PIBJADPEZQHMQS-KZBLUPIWSA-N

> <FORMULA>
C18H20O3

> <MOLECULAR_WEIGHT>
284.355

> <EXACT_MASS>
284.141244504

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
41

> <JCHEM_AVERAGE_POLARIZABILITY>
31.450240232619382

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4-[(2R,3S,4R,5S)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol

> <JCHEM_LOGP>
4.221642285666666

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.773245945689743

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.171185954361649

> <JCHEM_PKA_STRONGEST_BASIC>
-4.233473315635812

> <JCHEM_POLAR_SURFACE_AREA>
49.69

> <JCHEM_REFRACTIVITY>
82.02410000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
4-[(2R,3S,4R,5S)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.580  -3.215   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.044  -2.739   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.364  -1.233   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.829  -0.757   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.973  -1.788   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       8.438  -1.312   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       6.653  -3.294   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.189  -3.770   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.104  -4.680   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       0.564  -4.680   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.342  -5.926   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.285  -7.333   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.620  -8.578   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.152  -8.417   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -3.057  -9.663   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -2.778  -7.011   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.873  -5.765   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       0.088  -3.215   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.377  -2.739   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   20                                                  
CONECT    3    2    4   11                                                  
CONECT    4    3    5   10                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9    4                                                       
CONECT   11    3   12                                                       
CONECT   12   11   13   20                                                  
CONECT   13   12   14   19                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   13                                                       
CONECT   20   12    2   21                                                  
CONECT   21   20                                                            
MASTER        0    0    0    0    0    0    0    0   21    0   46    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₂₀O₃

Average Mass

284.3550 Da

Monoisotopic Mass

284.14124 Da

IUPAC Name

4-[(2R,3S,4R,5S)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol

Traditional Name

4-[(2R,3S,4R,5S)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@@H](C)[C@H](O[C@H]1C1=CC=C(O)C=C1)C1=CC=C(O)C=C1

InChI Identifier

InChI=1S/C18H20O3/c1-11-12(2)18(14-5-9-16(20)10-6-14)21-17(11)13-3-7-15(19)8-4-13/h3-12,17-20H,1-2H3/t11-,12+,17+,18-

InChI Key

PIBJADPEZQHMQS-KZBLUPIWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 7,7'-epoxylignans. These are lignans with a structure based on a 2,5-diaryl-3, 4-dimethyltetrahydrofuran skeleton.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Furanoid lignans

Sub Class

Tetrahydrofuran lignans

Direct Parent

7,7'-epoxylignans

Alternative Parents

Substituents

7,7p-epoxylignan
Dibenzylbutane lignan skeleton
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Monocyclic benzene moiety
Tetrahydrofuran
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.22	ChemAxon
pKa (Strongest Acidic)	9.17	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	49.69 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	82.02 m³·mol⁻¹	ChemAxon
Polarizability	31.45 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

400393

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

454714

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Dos Santos Maia M, Rodrigues GCS, de Sousa NF, Scotti MT, Scotti L, Mendonca-Junior FJB: Identification of New Targets and the Virtual Screening of Lignans against Alzheimer's Disease. Oxid Med Cell Longev. 2020 Aug 15;2020:3098673. doi: 10.1155/2020/3098673. eCollection 2020. [PubMed:32879651 ]
LOTUS database [Link]

Showing NP-Card for 4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol (NP0302349)

MOL for NP0302349 (4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol)

3D MOL for NP0302349 (4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol)

3D SDF for NP0302349 (4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol)

3D-SDF for NP0302349 (4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol)

PDB for NP0302349 (4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol)

3D PDB for NP0302349 (4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol)

SMILES for NP0302349 (4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol)

INCHI for NP0302349 (4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol)

Structure for NP0302349 (4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol)

3D Structure for NP0302349 (4-[(2r,3s,4r,5s)-5-(4-hydroxyphenyl)-3,4-dimethyloxolan-2-yl]phenol)