| Record Information |
|---|
| Version | 2.0 |
|---|
| Created at | 2022-09-10 14:18:31 UTC |
|---|
| Updated at | 2022-09-10 14:18:31 UTC |
|---|
| NP-MRD ID | NP0301386 |
|---|
| Secondary Accession Numbers | None |
|---|
| Natural Product Identification |
|---|
| Common Name | (1s,2s,9s,10r,14r)-2,6,11,11,14-pentamethyltetracyclo[7.6.0.0¹,⁵.0¹⁰,¹⁴]pentadec-5-ene |
|---|
| Description | Phomopsene belongs to the class of organic compounds known as iridoids and derivatives. These are monoterpenes containing a skeleton structurally characterized by the presence of a cylopentane fused to a pyran ( forming a 4,7-dimethylcyclopenta[c]pyran), or a derivative where the pentane moiety is open. (1s,2s,9s,10r,14r)-2,6,11,11,14-pentamethyltetracyclo[7.6.0.0¹,⁵.0¹⁰,¹⁴]pentadec-5-ene is found in Diaporthe amygdali. (1s,2s,9s,10r,14r)-2,6,11,11,14-pentamethyltetracyclo[7.6.0.0¹,⁵.0¹⁰,¹⁴]pentadec-5-ene was first documented in 2009 (PMID: 19161275). Based on a literature review a small amount of articles have been published on phomopsene (PMID: 29758116) (PMID: 31034729) (PMID: 28270685). |
|---|
| Structure | C[C@H]1CCC2=C(C)CC[C@H]3[C@@H]4C(C)(C)CC[C@]4(C)C[C@@]123 InChI=1S/C20H32/c1-13-6-8-16-17-18(3,4)10-11-19(17,5)12-20(16)14(2)7-9-15(13)20/h14,16-17H,6-12H2,1-5H3/t14-,16-,17+,19+,20+/m0/s1 |
|---|
| Synonyms | Not Available |
|---|
| Chemical Formula | C20H32 |
|---|
| Average Mass | 272.4760 Da |
|---|
| Monoisotopic Mass | 272.25040 Da |
|---|
| IUPAC Name | (1S,2S,9S,10R,14R)-2,6,11,11,14-pentamethyltetracyclo[7.6.0.0^{1,5}.0^{10,14}]pentadec-5-ene |
|---|
| Traditional Name | (1S,2S,9S,10R,14R)-2,6,11,11,14-pentamethyltetracyclo[7.6.0.0^{1,5}.0^{10,14}]pentadec-5-ene |
|---|
| CAS Registry Number | Not Available |
|---|
| SMILES | C[C@H]1CCC2=C(C)CC[C@H]3[C@@H]4C(C)(C)CC[C@]4(C)C[C@@]123 |
|---|
| InChI Identifier | InChI=1S/C20H32/c1-13-6-8-16-17-18(3,4)10-11-19(17,5)12-20(16)14(2)7-9-15(13)20/h14,16-17H,6-12H2,1-5H3/t14-,16-,17+,19+,20+/m0/s1 |
|---|
| InChI Key | WFXPJSKWJXCYJM-TWRRNRRFSA-N |
|---|
| Experimental Spectra |
|---|
|
| Not Available | | Predicted Spectra |
|---|
|
| | Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
|---|
| 1D NMR | 13C NMR Spectrum (1D, 25 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| | Chemical Shift Submissions |
|---|
|
| Not Available | | Species |
|---|
| Species of Origin | |
|---|
| Chemical Taxonomy |
|---|
| Description | Belongs to the class of organic compounds known as iridoids and derivatives. These are monoterpenes containing a skeleton structurally characterized by the presence of a cylopentane fused to a pyran ( forming a 4,7-dimethylcyclopenta[c]pyran), or a derivative where the pentane moiety is open. |
|---|
| Kingdom | Organic compounds |
|---|
| Super Class | Lipids and lipid-like molecules |
|---|
| Class | Prenol lipids |
|---|
| Sub Class | Monoterpenoids |
|---|
| Direct Parent | Iridoids and derivatives |
|---|
| Alternative Parents | |
|---|
| Substituents | - 11-noriridane monoterpenoid
- Branched unsaturated hydrocarbon
- Polycyclic hydrocarbon
- Cyclic olefin
- Unsaturated aliphatic hydrocarbon
- Unsaturated hydrocarbon
- Olefin
- Hydrocarbon
- Aliphatic homopolycyclic compound
|
|---|
| Molecular Framework | Aliphatic homopolycyclic compounds |
|---|
| External Descriptors | Not Available |
|---|
| Physical Properties |
|---|
| State | Not Available |
|---|
| Experimental Properties | | Property | Value | Reference |
|---|
| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
|
|---|
| Predicted Properties | |
|---|
| General References | - Toyomasu T, Kaneko A, Tokiwano T, Kanno Y, Kanno Y, Niida R, Miura S, Nishioka T, Ikeda C, Mitsuhashi W, Dairi T, Kawano T, Oikawa H, Kato N, Sassa T: Biosynthetic gene-based secondary metabolite screening: a new diterpene, methyl phomopsenonate, from the fungus Phomopsis amygdali. J Org Chem. 2009 Feb 20;74(4):1541-8. doi: 10.1021/jo802319e. [PubMed:19161275 ]
- Lauterbach L, Rinkel J, Dickschat JS: Two Bacterial Diterpene Synthases from Allokutzneria albata Produce Bonnadiene, Phomopsene, and Allokutznerene. Angew Chem Int Ed Engl. 2018 Jul 2;57(27):8280-8283. doi: 10.1002/anie.201803800. Epub 2018 Jun 6. [PubMed:29758116 ]
- Rinkel J, Steiner ST, Dickschat JS: Diterpene Biosynthesis in Actinomycetes: Studies on Cattleyene Synthase and Phomopsene Synthase. Angew Chem Int Ed Engl. 2019 Jul 1;58(27):9230-9233. doi: 10.1002/anie.201902950. Epub 2019 May 24. [PubMed:31034729 ]
- Shinde SS, Minami A, Chen Z, Tokiwano T, Toyomasu T, Kato N, Sassa T, Oikawa H: Cyclization mechanism of phomopsene synthase: mass spectrometry based analysis of various site-specifically labeled terpenes. J Antibiot (Tokyo). 2017 May;70(5):632-638. doi: 10.1038/ja.2017.27. Epub 2017 Mar 8. [PubMed:28270685 ]
- LOTUS database [Link]
|
|---|