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Record Information
Version2.0
Created at2022-09-10 14:13:09 UTC
Updated at2022-09-10 14:13:09 UTC
NP-MRD IDNP0301334
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2r,4'r,11's,12'r)-4,6,8',11'-tetrahydroxy-4',12'-bis(4-hydroxyphenyl)-5',13'-dioxaspiro[1-benzofuran-2,3'-tricyclo[7.4.0.0²,⁶]tridecane]-1'(9'),2'(6'),7'-trien-3-one
DescriptionGenkwanol A belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety. (2r,4'r,11's,12'r)-4,6,8',11'-tetrahydroxy-4',12'-bis(4-hydroxyphenyl)-5',13'-dioxaspiro[1-benzofuran-2,3'-tricyclo[7.4.0.0²,⁶]tridecane]-1'(9'),2'(6'),7'-trien-3-one is found in Daphne genkwa and Wikstroemia indica. (2r,4'r,11's,12'r)-4,6,8',11'-tetrahydroxy-4',12'-bis(4-hydroxyphenyl)-5',13'-dioxaspiro[1-benzofuran-2,3'-tricyclo[7.4.0.0²,⁶]tridecane]-1'(9'),2'(6'),7'-trien-3-one was first documented in 2014 (PMID: 25096753). Based on a literature review a small amount of articles have been published on Genkwanol A (PMID: 32248516) (PMID: 25076123) (PMID: 32468007).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC30H22O10
Average Mass542.4960 Da
Monoisotopic Mass542.12130 Da
IUPAC Name(2R,4'R,11'S,12'R)-4,6,8',11'-tetrahydroxy-4',12'-bis(4-hydroxyphenyl)-3H-5',13'-dioxaspiro[1-benzofuran-2,3'-tricyclo[7.4.0.0^{2,6}]tridecane]-1'(9'),2'(6'),7'-trien-3-one
Traditional Name(2R,4'R,11'S,12'R)-4,6,8',11'-tetrahydroxy-4',12'-bis(4-hydroxyphenyl)-5',13'-dioxaspiro[1-benzofuran-2,3'-tricyclo[7.4.0.0^{2,6}]tridecane]-1'(9'),2'(6'),7'-trien-3-one
CAS Registry NumberNot Available
SMILES
O[C@H]1CC2=C(O[C@@H]1C1=CC=C(O)C=C1)C1=C(O[C@H](C3=CC=C(O)C=C3)[C@]11OC3=CC(O)=CC(O)=C3C1=O)C=C2O
InChI Identifier
InChI=1S/C30H22O10/c31-15-5-1-13(2-6-15)26-21(36)11-18-19(34)12-23-25(27(18)39-26)30(29(38-23)14-3-7-16(32)8-4-14)28(37)24-20(35)9-17(33)10-22(24)40-30/h1-10,12,21,26,29,31-36H,11H2/t21-,26+,29+,30-/m0/s1
InChI KeyBYBKYSAHKVMKNH-KAXVLVORSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Daphne genkwaLOTUS Database
Wikstroemia indicaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
Class2-arylbenzofuran flavonoids
Sub ClassNot Available
Direct Parent2-arylbenzofuran flavonoids
Alternative Parents
Substituents
  • 2-arylbenzofuran flavonoid
  • 3-hydroxyflavonoid
  • 4'-hydroxyflavonoid
  • 5-hydroxyflavonoid
  • Flavan-3-ol
  • Hydroxyflavonoid
  • Neolignan skeleton
  • Flavan
  • Chromane
  • Benzopyran
  • 1-benzopyran
  • Benzofuran
  • Coumaran
  • Aryl alkyl ketone
  • Aryl ketone
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Phenol
  • Benzenoid
  • Monocyclic benzene moiety
  • Vinylogous acid
  • Ketone
  • Secondary alcohol
  • Organoheterocyclic compound
  • Ether
  • Oxacycle
  • Polyol
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Organooxygen compound
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.71ChemAxon
pKa (Strongest Acidic)7.68ChemAxon
pKa (Strongest Basic)-3.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area166.14 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity139.39 m³·mol⁻¹ChemAxon
Polarizability52.23 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDC00013286
Chemspider ID349985
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound394845
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Ghanadian M, Ali Z, Khan IA, Balachandran P, Nikahd M, Aghaei M, Mirzaei M, Sajjadi SE: A new sesquiterpenoid from the shoots of Iranian Daphne mucronata Royle with selective inhibition of STAT3 and Smad3/4 cancer-related signaling pathways. Daru. 2020 Jun;28(1):253-262. doi: 10.1007/s40199-020-00336-x. Epub 2020 Apr 5. [PubMed:32248516 ]
  2. Yan Z, Guo H, Yang J, Liu Q, Jin H, Xu R, Cui H, Qin B: Phytotoxic flavonoids from roots of Stellera chamaejasme L. (Thymelaeaceae). Phytochemistry. 2014 Oct;106:61-68. doi: 10.1016/j.phytochem.2014.07.013. Epub 2014 Aug 2. [PubMed:25096753 ]
  3. Ghanem H, Haba H, Marcourt L, Benkhaled M, Wolfender JL: Microphynolides A and B, new spiro-gamma-lactone glycosides from Thymelaea microphylla. Nat Prod Res. 2014;28(20):1732-8. doi: 10.1080/14786419.2014.942662. Epub 2014 Jul 30. [PubMed:25076123 ]
  4. Kizaibek M, Wubuli A, Gu Z, Bahetjan D, Tursinbai L, Nurhamit K, Chen B, Wang J, Tahan O, Cao P: Effects of an ethyl acetate extract of Daphne altaica stem bark on the cell cycle, apoptosis and expression of PPARgamma in Eca‑109 human esophageal carcinoma cells. Mol Med Rep. 2020 Aug;22(2):1400-1408. doi: 10.3892/mmr.2020.11187. Epub 2020 May 27. [PubMed:32468007 ]
  5. LOTUS database [Link]