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Record Information
Version2.0
Created at2022-09-10 13:12:46 UTC
Updated at2022-09-10 13:12:47 UTC
NP-MRD IDNP0300679
Secondary Accession NumbersNone
Natural Product Identification
Common Name(1r,2s,5s,6r,10r,11s,12r,15r,19s)-6-(furan-3-yl)-11-hydroxy-1,5,10,15-tetramethyl-13-oxapentacyclo[10.6.1.0²,¹⁰.0⁵,⁹.0¹⁵,¹⁹]nonadeca-8,16-dien-18-one
DescriptionCeramicine B belongs to the class of organic compounds known as limonoids. These are highly oxygenated, modified terpenoids with a prototypical structure either containing or derived from a precursor with a 4,4,8-trimethyl-17-furanylsteroid skeleton. All naturally occurring citrus limonoids contain a furan ring attached to the D-ring, at C-17, as well as oxygen containing functional groups at C-3, C-4, C-7, C-16 and C-17. (1r,2s,5s,6r,10r,11s,12r,15r,19s)-6-(furan-3-yl)-11-hydroxy-1,5,10,15-tetramethyl-13-oxapentacyclo[10.6.1.0²,¹⁰.0⁵,⁹.0¹⁵,¹⁹]nonadeca-8,16-dien-18-one is found in Chisocheton ceramicus. (1r,2s,5s,6r,10r,11s,12r,15r,19s)-6-(furan-3-yl)-11-hydroxy-1,5,10,15-tetramethyl-13-oxapentacyclo[10.6.1.0²,¹⁰.0⁵,⁹.0¹⁵,¹⁹]nonadeca-8,16-dien-18-one was first documented in 2014 (PMID: 23494817). Based on a literature review a small amount of articles have been published on Ceramicine B (PMID: 34089255) (PMID: 29368952) (PMID: 28822030) (PMID: 27357963).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC26H32O4
Average Mass408.5380 Da
Monoisotopic Mass408.23006 Da
IUPAC Name(1R,2S,5S,6R,10R,11S,12R,15R,19S)-6-(furan-3-yl)-11-hydroxy-1,5,10,15-tetramethyl-13-oxapentacyclo[10.6.1.0^{2,10}.0^{5,9}.0^{15,19}]nonadeca-8,16-dien-18-one
Traditional Name(1R,2S,5S,6R,10R,11S,12R,15R,19S)-6-(furan-3-yl)-11-hydroxy-1,5,10,15-tetramethyl-13-oxapentacyclo[10.6.1.0^{2,10}.0^{5,9}.0^{15,19}]nonadeca-8,16-dien-18-one
CAS Registry NumberNot Available
SMILES
C[C@]12CO[C@@H]3[C@@H]1[C@@](C)([C@H]1CC[C@@]4(C)[C@@H](CC=C4[C@]1(C)[C@@H]3O)C1=COC=C1)C(=O)C=C2
InChI Identifier
InChI=1S/C26H32O4/c1-23-10-8-19(27)26(4)18-7-11-24(2)16(15-9-12-29-13-15)5-6-17(24)25(18,3)22(28)20(21(23)26)30-14-23/h6,8-10,12-13,16,18,20-22,28H,5,7,11,14H2,1-4H3/t16-,18-,20+,21-,22+,23-,24-,25-,26-/m0/s1
InChI KeyAEPJQKVEJDKGIZ-RTBHCFDSSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Chisocheton ceramicusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as limonoids. These are highly oxygenated, modified terpenoids with a prototypical structure either containing or derived from a precursor with a 4,4,8-trimethyl-17-furanylsteroid skeleton. All naturally occurring citrus limonoids contain a furan ring attached to the D-ring, at C-17, as well as oxygen containing functional groups at C-3, C-4, C-7, C-16 and C-17.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTriterpenoids
Direct ParentLimonoids
Alternative Parents
Substituents
  • Limonoid skeleton
  • 17-furanylsteroid skeleton
  • Steroid
  • Naphthofuran
  • Cyclohexenone
  • Cyclic alcohol
  • Furan
  • Heteroaromatic compound
  • Tetrahydrofuran
  • Ketone
  • Secondary alcohol
  • Dialkyl ether
  • Ether
  • Oxacycle
  • Organoheterocyclic compound
  • Alcohol
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Carbonyl group
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.85ChemAxon
pKa (Strongest Acidic)13.68ChemAxon
pKa (Strongest Basic)-2.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area59.67 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity115.8 m³·mol⁻¹ChemAxon
Polarizability45.44 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID24715424
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound42609928
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Kenfack Tsobnang P, Tsamo Tontsa A, Mbiangue YA, Kemda Nangmo P, Kenfack Tiofack S, Mkounga P, Nkengfack Ephrem A, Tonle Kenfack I: Contributions of secondary alcohol-ketone O-H...O=C and furan-acetate Csp(2)-H...OOC synthons to the supramolecular packings of two bioactive molecules. Acta Crystallogr C Struct Chem. 2021 Jun 1;77(Pt 6):312-320. doi: 10.1107/S2053229621005209. Epub 2021 May 27. [PubMed:34089255 ]
  2. Supriatno, Nurlelasari, Herlina T, Harneti D, Maharani R, Hidayat AT, Mayanti T, Supratman U, Azmi MN, Shiono Y: A new limonoid from stem bark of Chisocheton pentandrus (Meliaceae). Nat Prod Res. 2018 Nov;32(21):2610-2616. doi: 10.1080/14786419.2018.1428600. Epub 2018 Jan 25. [PubMed:29368952 ]
  3. Nugroho AE, Hashimoto A, Wong CP, Yokoe H, Tsubuki M, Kaneda T, Hadi AHA, Morita H: Ceramicines M-P from Chisocheton ceramicus: isolation and structure-activity relationship study. J Nat Med. 2018 Jan;72(1):64-72. doi: 10.1007/s11418-017-1109-2. Epub 2017 Aug 18. [PubMed:28822030 ]
  4. Iijima C, Wong CP, Nugroho AE, Sotozono Y, Someya S, Hirasawa Y, Kaneda T, Hadi AH, Morita H: Anti-melanin deposition activity of ceramicines from Chisocheton ceramicus. J Nat Med. 2016 Oct;70(4):702-7. doi: 10.1007/s11418-016-1016-y. Epub 2016 Jun 29. [PubMed:27357963 ]
  5. Wong CP, Kaneda T, Hadi AH, Morita H: Ceramicine B, a limonoid with anti-lipid droplets accumulation activity from Chisocheton ceramicus. J Nat Med. 2014 Jan;68(1):22-30. doi: 10.1007/s11418-013-0755-2. Epub 2013 Mar 14. [PubMed:23494817 ]
  6. LOTUS database [Link]