NP-MRD: Showing NP-Card for (1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate (NP0300275)

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Record Information

Version

2.0

Created at

2022-09-10 12:35:28 UTC

Updated at

2022-09-10 12:35:29 UTC

NP-MRD ID

NP0300275

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate

Description

Sirodesmin PL belongs to the class of organic compounds known as epipolythiodioxopiperazines. Epipolythiodioxopiperazines are compounds containing an epipolythiodioxopiperazine moiety, which consists of a 2,3-dithia-5,7-diazabicyclo[2.2.2]Octane-6,8-dione ring system. One distinct characteristics of Epipolythiodioxopiperazines is the presence of unique di- or polysulfide bridges. (1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate is found in Leptosphaeria maculans. Based on a literature review very few articles have been published on Sirodesmin PL.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309102214352D          

 32 36  0  0  1  0            999 V2000
    6.4486    3.2003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0366    2.4856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4496    1.7714    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2116    2.4850    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7996    1.7703    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1356    1.0168    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5229    0.4644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8082    0.8764    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9459    0.7855    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5326   -0.0516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9864   -0.7405    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5866   -0.1016    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1832   -0.8212    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6047   -1.5304    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1402    0.4027    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.9267    1.1189    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.5099    1.5897    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2181    2.0620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9791    1.6835    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1253    2.4955    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5428    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0756    2.2087    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1582    0.6899    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3337    0.6626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7484    1.5693    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4631    1.1573    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2166    1.4933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2921    0.3502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1127    0.2645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2927   -0.4748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4717    0.2634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0597   -0.4514    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17  9  1  6  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
  5 19  1  0  0  0  0
  8 19  1  0  0  0  0
 19 20  1  6  0  0  0
 17 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 12 23  1  0  0  0  0
 23 24  1  0  0  0  0
  6 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  6  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 28 31  1  0  0  0  0
  6 31  1  0  0  0  0
 31 32  2  0  0  0  0
M  END

     RDKit          3D

 58 62  0  0  0  0  0  0  0  0999 V2000
   -2.5820   -4.6449   -0.3237 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6996   -3.5401    0.1338 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9901   -3.7197    1.1589 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6060   -2.3205   -0.4963 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7716   -1.2626   -0.0718 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.5183   -0.0019    0.2154 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4272    1.0452    0.1910 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5635    0.5474   -0.8408 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8966    0.5439   -0.3211 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.7706    1.5791    0.1155 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3933    2.7787    0.0520 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1323    1.2424    0.6478 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.9984    2.4164    0.8206 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4665    3.3309    1.6952 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8197    0.3491    2.2169 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.4810   -1.2147    1.5423 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.3920   -0.8406   -0.2557 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4661   -1.7013   -0.9907 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2196   -0.8668   -1.1387 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2659   -1.0754   -2.4266 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7797   -0.7931   -0.7349 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1707   -1.6666   -1.5465 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6464    0.2369   -0.2711 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.0326    0.3176   -0.6866 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1854   -0.0300    1.4372 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0785    1.0067    1.3507 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0780    1.0702    2.4499 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6727    0.9255   -0.0268 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0395    2.3092   -0.4758 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8092   -0.0566   -0.1297 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5235    0.3547   -0.7826 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5044    0.2426   -1.9871 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0036   -5.5866   -0.2063 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4976   -4.7345    0.2725 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8329   -4.5601   -1.3992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1870   -1.5221    0.8416 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8259    2.0505   -0.0764 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0370    1.0539    1.2063 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4547    1.1379   -1.7776 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9790    2.0736    1.2559 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2090    2.9408   -0.1289 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1291    3.9811    2.0604 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2181   -2.6646   -0.5116 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8842   -1.9616   -1.9961 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0350   -1.9814   -2.7485 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.7221    0.5194    0.1640 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1349    1.0812   -1.4987 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3856   -0.6485   -1.1245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4807    1.9597    1.3834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2063    2.1057    2.8296 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6931    0.4741    3.3253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0769    0.6936    2.2025 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6940    2.7625    0.2856 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1201    2.8884   -0.6392 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6160    2.2698   -1.4262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7960   -0.6319   -1.0826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8128   -0.8041    0.6834 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7525    0.5416   -0.1554 H   0  0  0  0  0  0  0  0  0  0  0  0
 27 26  1  0
 26 25  1  0
  6 25  1  1
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 12 13  1  1
 13 14  1  0
 12 15  1  0
 15 16  1  0
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 17 18  1  6
 18 19  1  0
 19 20  1  6
 19  5  1  0
  5  4  1  0
  4  2  1  0
  2  1  1  0
  2  3  2  0
 17 21  1  0
 21 22  2  0
 21 23  1  0
 23 24  1  0
  6 31  1  0
 31 32  2  0
 31 28  1  0
 28 29  1  0
 28 30  1  0
 28 26  1  0
  5  6  1  0
 19  8  1  0
 17  9  1  0
 23 12  1  0
 27 50  1  0
 27 51  1  0
 27 52  1  0
 26 49  1  6
  7 37  1  0
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  8 39  1  6
 13 40  1  0
 13 41  1  0
 14 42  1  0
 18 43  1  0
 18 44  1  0
 20 45  1  0
  5 36  1  1
  1 33  1  0
  1 34  1  0
  1 35  1  0
 24 46  1  0
 24 47  1  0
 24 48  1  0
 29 53  1  0
 29 54  1  0
 29 55  1  0
 30 56  1  0
 30 57  1  0
 30 58  1  0
M  END


  Mrv1652309102214352D          

 32 36  0  0  1  0            999 V2000
    6.4486    3.2003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0366    2.4856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4496    1.7714    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2116    2.4850    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7996    1.7703    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1356    1.0168    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5229    0.4644    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8082    0.8764    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9459    0.7855    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5326   -0.0516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9864   -0.7405    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5866   -0.1016    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1832   -0.8212    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6047   -1.5304    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1402    0.4027    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    1.9267    1.1189    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.5099    1.5897    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2181    2.0620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9791    1.6835    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1253    2.4955    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5428    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0756    2.2087    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1582    0.6899    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3337    0.6626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7484    1.5693    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4631    1.1573    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2166    1.4933    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2921    0.3502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1127    0.2645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2927   -0.4748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4717    0.2634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0597   -0.4514    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 13 14  1  0  0  0  0
 12 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17  9  1  6  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
  5 19  1  0  0  0  0
  8 19  1  0  0  0  0
 19 20  1  6  0  0  0
 17 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 12 23  1  0  0  0  0
 23 24  1  0  0  0  0
  6 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  6  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 28 31  1  0  0  0  0
  6 31  1  0  0  0  0
 31 32  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0300275

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1O[C@]2(C[C@H]3N4C(=O)[C@@]5(CO)SS[C@]4(C[C@@]3(O)[C@@H]2OC(C)=O)C(=O)N5C)C(=O)C1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C20H26N2O8S2/c1-9-16(3,4)12(25)18(30-9)6-11-17(28,13(18)29-10(2)24)7-19-14(26)21(5)20(8-23,32-31-19)15(27)22(11)19/h9,11,13,23,28H,6-8H2,1-5H3/t9-,11-,13+,17+,18-,19-,20-/m1/s1

> <INCHI_KEY>
KTAIGLOGMSQPCG-OQIMMBKLSA-N

> <FORMULA>
C20H26N2O8S2

> <MOLECULAR_WEIGHT>
486.55

> <EXACT_MASS>
486.113058153

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
47.219646382229435

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1'R,2S,3'S,4'S,5R,7'R,10'R)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0^{1,8}.0^{3,7}]tetradecane]-4'-yl acetate

> <JCHEM_LOGP>
0.7817401529999997

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.126789098305082

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.97569255274362

> <JCHEM_PKA_STRONGEST_BASIC>
-3.1958775515347195

> <JCHEM_POLAR_SURFACE_AREA>
133.68

> <JCHEM_REFRACTIVITY>
112.76519999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1'R,2S,3'S,4'S,5R,7'R,10'R)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0^{1,8}.0^{3,7}]tetradecane]-4'-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 10-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   10-SEP-22         0                                  
HETATM    1  C   UNK     0      12.037   5.974   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      11.268   4.640   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      12.039   3.307   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       9.728   4.639   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       8.959   3.305   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.587   1.898   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.443   0.867   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.109   1.636   0.000  0.00  0.00           C+0
HETATM    9  N   UNK     0       5.499   1.466   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       4.727  -0.096   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       5.575  -1.382   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       2.962  -0.190   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.209  -1.533   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       2.996  -2.857   0.000  0.00  0.00           O+0
HETATM   15  S   UNK     0       3.995   0.752   0.000  0.00  0.00           S+0
HETATM   16  S   UNK     0       3.597   2.089   0.000  0.00  0.00           S+0
HETATM   17  C   UNK     0       4.685   2.967   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.007   3.849   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.428   3.143   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       7.701   4.658   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       2.880   2.854   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.008   4.123   0.000  0.00  0.00           O+0
HETATM   23  N   UNK     0       2.162   1.288   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0       0.623   1.237   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      10.730   2.929   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      12.064   2.160   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      13.471   2.788   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      11.745   0.654   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      13.277   0.494   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      11.746  -0.886   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      10.214   0.492   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       9.445  -0.843   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   19                                                  
CONECT    6    5    7   25   31                                             
CONECT    7    6    8                                                       
CONECT    8    7    9   19                                                  
CONECT    9    8   10   17                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   15   23                                             
CONECT   13   12   14                                                       
CONECT   14   13                                                            
CONECT   15   12   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16    9   18   21                                             
CONECT   18   17   19                                                       
CONECT   19   18    5    8   20                                             
CONECT   20   19                                                            
CONECT   21   17   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   12   24                                                  
CONECT   24   23                                                            
CONECT   25    6   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30   31                                             
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31   28    6   32                                                  
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   72    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₆N₂O₈S₂

Average Mass

486.5500 Da

Monoisotopic Mass

486.11306 Da

IUPAC Name

(1'R,2S,3'S,4'S,5R,7'R,10'R)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0^{1,8}.0^{3,7}]tetradecane]-4'-yl acetate

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@H]1O[C@]2(C[C@H]3N4C(=O)[C@@]5(CO)SS[C@]4(C[C@@]3(O)[C@@H]2OC(C)=O)C(=O)N5C)C(=O)C1(C)C

InChI Identifier

InChI=1S/C20H26N2O8S2/c1-9-16(3,4)12(25)18(30-9)6-11-17(28,13(18)29-10(2)24)7-19-14(26)21(5)20(8-23,32-31-19)15(27)22(11)19/h9,11,13,23,28H,6-8H2,1-5H3/t9-,11-,13+,17+,18-,19-,20-/m1/s1

InChI Key

KTAIGLOGMSQPCG-OQIMMBKLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Leptosphaeria maculans	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as epipolythiodioxopiperazines. Epipolythiodioxopiperazines are compounds containing an epipolythiodioxopiperazine moiety, which consists of a 2,3-dithia-5,7-diazabicyclo[2.2.2]Octane-6,8-dione ring system. One distinct characteristics of Epipolythiodioxopiperazines is the presence of unique di- or polysulfide bridges.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Diazinanes

Sub Class

Piperazines

Direct Parent

Epipolythiodioxopiperazines

Alternative Parents

Substituents

Alpha-amino acid or derivatives
Epipolythiodioxopiperazine
N-alkylpiperazine
N-methylpiperazine
Dithiazinane
3-furanone
Cyclic alcohol
Tetrahydrofuran
Tertiary carboxylic acid amide
Tertiary alcohol
Pyrrolidine
Carboxamide group
Carboxylic acid ester
Ketone
Lactam
Organic disulfide
Carboxylic acid derivative
Dialkyl ether
Ether
Oxacycle
Azacycle
Monocarboxylic acid or derivatives
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Carbonyl group
Organic oxygen compound
Primary alcohol
Alcohol
Organooxygen compound
Organonitrogen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.78	ChemAxon
pKa (Strongest Acidic)	12.98	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	133.68 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	112.77 m³·mol⁻¹	ChemAxon
Polarizability	47.22 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10222305

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15608374

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate (NP0300275)

MOL for NP0300275 ((1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

3D MOL for NP0300275 ((1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

3D SDF for NP0300275 ((1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

3D-SDF for NP0300275 ((1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

PDB for NP0300275 ((1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

3D PDB for NP0300275 ((1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

SMILES for NP0300275 ((1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

INCHI for NP0300275 ((1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

Structure for NP0300275 ((1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)

3D Structure for NP0300275 ((1'r,2s,3's,4's,5r,7'r,10'r)-3'-hydroxy-10'-(hydroxymethyl)-4,4,5,14'-tetramethyl-3,9',13'-trioxo-11',12'-dithia-8',14'-diazaspiro[oxolane-2,5'-tetracyclo[8.2.2.0¹,⁸.0³,⁷]tetradecan]-4'-yl acetate)